Query= MSMg01no306_j22.b1 MSMg01no306_j22.b1 CHROMAT_FILE:
MSMg01no306_j22.b1 PHD_FILE: MSMg01no306_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:28 2005
(703 letters)
>mm_chr17_85410657_85411759
Length = 1103
Score = 1311 bits (678), Expect = 0.0
Identities = 694/700 (99%), Gaps = 3/700 (0%)
Strand = Plus / Plus
Query: 5 gaattcaggtcctctaccttgaacagctaatgctttcactcactgaaccctctgcagtgc 64
|||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattcaggtcctcaagcttgaacagctaatgctttcactcactgaactctctgcagtgc 264
Query: 65 caaggatgtgttcttgtagtaaaatgtttgtttattaaactatgttagtctagatgacat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaggatgtgttcttgtagtaaaatgtttgtttattaaactatgttagtctagatgacat 324
Query: 125 agacattaagggaaattcatttttgtctcatcctgtcttgagatttttgcatagaataag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agacattaagggaaattcatttttgtctcatcctgtcttgagatttttgcatagaataag 384
Query: 185 agttttacaagaatgtatttagtcttgttttgtgtatataacattttgcctgcttgtgta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agttttacaagaatgtatttagtcttgttttgtgtatataacattttgcctgcttgtgta 444
Query: 245 gtaggtgcaccatgtagatgtagtgtctgaaggcaagaagaaagctggagcctctgaagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtaggtgcaccatgtagatgtagtgtctgaaggcaagaagaaagctggagcctctgaagc 504
Query: 305 tagagctacagatggttgtgagctgccttgtgggtgctagaaacttaacccccagtcctc 364
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 505 tagagctacagatggttgtgagctgccttgtgggtgctagaaacttaacccc-agtcctc 563
Query: 365 ttcaggaatagcagttactctcaactgcaaagccatccctccagattcctgtaaacattt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttcaggaatagcagttactctcaactgcaaagccatccctccagattcctgtaaacattt 623
Query: 425 taaacattatatatat--tttttatatgcacatacacatataaatggatacatacataca 482
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taaacattatatatatattttttatatgcacatacacatataaatggatacatacataca 683
Query: 483 tacatataaaaatttaaatcatgggtgttttgcatatgtgcctttgtatcacatgcatac 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tacatataaaaatttaaatcatgggtgttttgcatatgtgcctttgtatcacatgcatac 743
Query: 543 ctggtatccgtggaggcttgggactggagcttcagatagttgtaagccactatgttgatc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctggtatccgtggaggcttgggactggagcttcagatagttgtaagccactatgttgatc 803
Query: 603 ctaggaattgaaccctggttctttggcttaacagccatttctcttttaactgctgagctc 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ctaggaattgaaccctggttctttggcttaacagccatttctcttttaactgctgagctc 863
Query: 663 tctctccagcctcttaaacatcactgtaaataagtgtcta 702
||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 tctctccagcctcttaaacatcactgtaaataagtgtcta 903
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space: 757449
Effective search space used: 757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no306_j22.g1 MSMg01no306_j22.g1 CHROMAT_FILE:
MSMg01no306_j22.g1 PHD_FILE: MSMg01no306_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:28 2005
(625 letters)
>mm_chr17_85576297_85577321
Length = 1025
Score = 1131 bits (585), Expect = 0.0
Identities = 615/625 (98%)
Strand = Plus / Minus
Query: 1 accttaacacttcttgatgtacagagaagtgtgggggtggggaggagatgtgacatgcga 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 825 accttaacacttcttgatgtacagagaagcgtgggggtggggaggagatgtgacatgcga 766
Query: 61 tgacgccttactctgtcaggggggttaaccaggattcaagagggtcacgacacaagaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 tgacgccttactctgtcaggggggttaaccaggattcaagagggtcacgacacaagaaag 706
Query: 121 ccgagagctcaaaggtcaggtcacaaactcacacagcactgttacagggaatggctcgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ccgagagctcaaaggtcaggtcacaaactcacacagcactgttacagggaatggctcgga 646
Query: 181 ctgtaccagctgaacagtggcctctctagcattaagtaaaacctctacagaggcaccgtt 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 645 ctgtaccagctgaacagtggcctctctagcgttaagtaaaacctctacagaggcaccgtt 586
Query: 241 ctctcacttcaagaaaaatccccttgctgtggtgataaaacacaattgttaagggcacag 300
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ctctcacgtcaagagaaatccccttgctgtggtgataaaacacaattgttaagggcacag 526
Query: 301 cactgacctaacacgctgacagcctctccagaagcgcctgacacgtctactgttcctcag 360
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 525 cactgacctaacacgctgacagcctcgccagaagcgcctgacacgtctaccgttcctcag 466
Query: 361 ctatgttatgtttggggccggtccatcttcccagggacaaatagaatggagagtcaggtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ctatgttatgtttggggccggtccatcttcccagggacaaatagaatggagagtcaggtc 406
Query: 421 agggccacaactgcctgctgtcttttaaacagaccagctctgtcaccccgctttatagca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agggccacaactgcctgctgtcttttaaacagaccagctctgtcaccccgctttatagca 346
Query: 481 gcacttcgaagcaaagctacccactcaactggccagcccctaggggactcagagagggga 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 345 gcacttcgaagcaaagctacccgctcaactggccagcccctaggggactcagagagggga 286
Query: 541 ctggaagggaggctgtatgctgatgacctcaagtcaccaggaagcatgactctgaaggct 600
|||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||
Sbjct: 285 ctggaagggaggctgtatgctgatgacctcaattcacctgaaagcatgactctgaaggct 226
Query: 601 tttactgtcctgagactgcagttgg 625
|||||||||||||||||||||||||
Sbjct: 225 tttactgtcctgagactgcagttgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
