Query= MSMg01no306_l04.b1 MSMg01no306_l04.b1 CHROMAT_FILE:
MSMg01no306_l04.b1 PHD_FILE: MSMg01no306_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:34 2005
(195 letters)
>mm_chr17_44764200_44764794
Length = 595
Score = 360 bits (186), Expect = e-104
Identities = 189/190 (99%)
Strand = Plus / Plus
Query: 5 gaattcactactggctcctcagccagcattctcctcactccatgggcatggcggcctact 64
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactactggctcctcagccagcgttctcctcactccatgggcatggcggcctact 264
Query: 65 cccagcatgcctgtctggtgagcatttgcagagctggcttggtcacgcctatgtgctgac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cccagcatgcctgtctggtgagcatttgcagagctggcttggtcacgcctatgtgctgac 324
Query: 125 cttgaaagtagtcaggggaactggatgcaaatctaggaaagttctgaaaacacaagacct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttgaaagtagtcaggggaactggatgcaaatctaggaaagttctgaaaacacaagacct 384
Query: 185 gcattttagg 194
||||||||||
Sbjct: 385 gcattttagg 394
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space: 109769
Effective search space used: 109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no306_l04.g1 MSMg01no306_l04.g1 CHROMAT_FILE:
MSMg01no306_l04.g1 PHD_FILE: MSMg01no306_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:34 2005
(369 letters)
>mm_chr17_44929938_44930706
Length = 769
Score = 634 bits (328), Expect = 0.0
Identities = 363/392 (92%), Gaps = 26/392 (6%)
Strand = Plus / Minus
Query: 1 cactgtcatcatggggaccctgcttacttcacagagcaacagcaaacaaagctggacgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cactgtcatcatggggaccctgcttacttcacagagcaacagcaaacaaagctggacgcc 599
Query: 61 cagagg--------------------------tgagaaggagaaatgggagggagagcta 94
|||||| ||||||||||||||||||||||||||||
Sbjct: 598 cagaggtgctacggtggactaaaggttttaaatgagaaggagaaatgggagggagagcta 539
Query: 95 actccaaagtaaagaattactaatgaaaataatggctagcttctgaaaactgctaagtag 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 actccaaagtaaagaattactaatgaaaataatggctagcttctgaaaactgctaagtag 479
Query: 155 atcaccgtgtctgttaaagaaagctcatggagcatgaaagcagcaaagcttgcagggtga 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 atcaccgtgtctgttaaagaaagctcatggagcatgaaagcagcaaagcttgcagggtga 419
Query: 215 aggggtttctgtccgctccattcaggtcccagttgtataaaatttaagacataccagtaa 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aggggtttctgtccgctccattcaggtcccagttgtataaaatttaagacataccagtaa 359
Query: 275 tgtctaaatgaatgaagttttcagagcaatctataacaactganaacatgacttanacat 334
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||
Sbjct: 358 tgtctaaatgaatgaagttttcagagcgatctataacaactgataacatgacttaaacat 299
Query: 335 gacatgcctgggattaatgaaaattcttcatc 366
||||||||||||||||||||||||||||||||
Sbjct: 298 gacatgcctgggattaatgaaaattcttcatc 267
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space: 273600
Effective search space used: 273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
