Query= MSMg01no306_n01.b1 MSMg01no306_n01.b1 CHROMAT_FILE:
MSMg01no306_n01.b1 PHD_FILE: MSMg01no306_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:42 2005
(600 letters)
>mm_chr17_27363685_27364684
Length = 1000
Score = 1116 bits (577), Expect = 0.0
Identities = 592/597 (99%), Gaps = 2/597 (0%)
Strand = Plus / Minus
Query: 5 gaattcagccctgacagcccaactttcatgagccaaggccccgtgtgactagtgcttaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gaattcagccctgacagcccaactttcatgagccaaggccccgtgtgactagtgcttaaa 741
Query: 65 cggacaagctaggtgatgggggtggatgcctgagaactggggtgtgctctaaattcctgc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cggacaagctaggtgatgggggtggatgcctgagaactggggtgtgctctaaattcctgc 681
Query: 125 gggatttctgactgcagtttctgactcagagtttgtttgcactttcaggaaaaaccttat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gggatttctgactgcagtttctgactcagagtttgtttgcactttcaggaaaaaccttat 621
Query: 185 tctagaaagtgcagaagggg-aaaaaatggacacagtttggggagaaagatgctgtctgt 243
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctagaaagtgcagaaggggaaaaaaatggacacagtttggggagaaagatgctgtctgt 561
Query: 244 gggtgctgcacagaagaggactgtcgttatgtaaagatgtccccaaagccaccctgtctg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gggtgctgcacagaagaggactgtcgttatgtaaagatgtccccaaagccaccctgtctg 501
Query: 304 tgtctgtccaatgtctaggaccttcttggtgtgggcttcggccagatgtgacacttggct 363
||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 500 tgtctgtccgacgtctaggacctt-ttggtgtgggcttcggccagatgtgacacttggct 442
Query: 364 gctacagttgctgaatattgtattttagaggctcagcctccacatctctaaagaggttgg 423
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttacagttgctgaatattgtattttagaggctcagcctccacatctctaaagaggttgg 382
Query: 424 tccctgagctctacggggacttggggctgtgagtgttacccaccaacaaaccacctcagc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccctgagctctacggggacttggggctgtgagtgttacccaccaacaaaccacctcagc 322
Query: 484 accagatctgaccagcagactcctgtgtgggctgatttaccctcctccaccagtccttcc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accagatctgaccagcagactcctgtgtgggctgatttaccctcctccaccagtccttcc 262
Query: 544 ccctcccccatgcagtcacccatccctgatccacaaaagtggagttttctcagtgca 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctcccccatgcagtcacccatccctgatccacaaaagtggagttttctcagtgca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no306_n01.g1 MSMg01no306_n01.g1 CHROMAT_FILE:
MSMg01no306_n01.g1 PHD_FILE: MSMg01no306_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:42 2005
(595 letters)
>mm_chr17_27172128_27173121
Length = 994
Score = 1075 bits (556), Expect = 0.0
Identities = 587/600 (97%), Gaps = 6/600 (1%)
Strand = Plus / Plus
Query: 1 acacctgctggtctgaggctgcactaaacctgcccacatgcccgcccatgccccaggata 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 acacctgctgggctgaggctgcactaaacctgcccacatgcccgcccatgccccaggata 255
Query: 61 ctcccacatccctagccactaaacccgtgtgggaatttaattttcctgtcatactgaggg 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cccccacatccctagccactaaacccgtgtgggaatttaattttcctgtcatactgaggg 315
Query: 121 gctccagccccagggcccgtcctcctccaggacctcgtgagcctgcccatccttgacatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gctccagccccagggcccgtcctcctccaggacctcgtgagcctgcccatccttgacatc 375
Query: 181 ctgggctcacggtcagtcgttgtctagcactgacagcactaagagactgggagtttctgg 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ctgggctcacggtcagtcgtggtctagcactgacagcactaagagactgggagtttctgg 435
Query: 241 ataacacgtttgccccaccccacccca-----gcgcaccccacccctggcctctccggta 295
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 436 ataacgcgtttgccccaccccaccccaccccagcgcaccccacccctggcctctccggta 495
Query: 296 gcaagtgtttcagcgtcccacgtctccccaccactgcctcctcctcagcccttaggacca 355
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 496 gcaagtgtttcagagtcccacgtctccccaccacttcctcctcctcagcccttaggacca 555
Query: 356 cgggctaagggggacagaacaggctcctcagcttttggggaatgccagggccctggggga 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cgggctaagggggacagaacaggctcctcagcttttggggaatgccagggccctggggga 615
Query: 416 atgaatgctcattaaggcagtcgaagggccattcggctagaagaaagtctgcagaagagc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 atgaatgctcattaaggcagtcgaagggccattcggctagaagaaagtctgcagaagagc 675
Query: 476 agaggcaaaagggaagagaggaacagccagggcctctagcttccaaggaacccagaagtc 535
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 676 agaggcaaaagggaagagaggaacagccagggcctccagcttccaaggaacccagaagtc 735
Query: 536 taaggagaagcgttcctacgtcatgggggggggtagtcggctcagtgtcagcaaacctgg 595
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 736 taaggagaagcgttcctacgtcatgggggggg-tagtcggctcagtgtcagcaaacctgg 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 994
Length adjustment: 10
Effective length of query: 585
Effective length of database: 984
Effective search space: 575640
Effective search space used: 575640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
