BAC Information

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BAC

Clone NameMSMg01-306O13
Chromosome17 (Build37)
Map Location 45,223,315 - 45,223,598
singlet/doubletsinglet
Overlap geneSupt3h
Upstream geneEnpp5, Enpp4, Clic5, Runx2, 4930564C03Rik
Downstream geneEG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306O13.T7 (MSMg01no306_o13.b1)MSMg01-306O13.TJ (MSMg01no306_o13.g1)
ACCAG431431AG431432
length755744
length of high quality
(start - end)
642 (76 - 717)284 (437 - 720)
definitionCHROMAT_FILE: MSMg01no306_o13.b1 PHD_FILE: MSMg01no306_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:49 2005CHROMAT_FILE: MSMg01no306_o13.g1 PHD_FILE: MSMg01no306_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCAGCTCCATTTCACTTCATGGGATCCCTTTAATACTCAAACTACATA
TTTTATATTTTTCATTTCTCAGCTTGCTGGACTTGTTTAAAATGCTCTTC
ATGAGACTATGATAGGCATTTCTGAGACTTCCTTTGTCAATGCAATTAAT
CTGAGTCCCTTCACTTTAGTGTCAGGCAAACACTTCAGACAAAGGCAAAA
AGTAGCCACAGTTTTTACAAAAAAAAAAAAAAAGGCTCTAGGCCACATAT
TGAAATTTCCACTGAAACCTCTTGGGACACGTCTTATAATTCAAATCACT
CTCAGTAACAAAGTCTTCCATATTCTTACTAGGCTATCCCATTAAGCCCC
ATTTAAAGCATTCCATGACTTTTCAAATCCAAAGTCCAAAACCCACATTC
TTCCAAACAAAAGCATGGATAGGCCTATCACCCCACTCCTGGTACCAAGT
TCTGTCTTAGGGTTTTACTGCTGTGAACAGACACCATGACTAAGGCAAGT
CTTATAAAGGGCAACATTTAATTGGGGCTGACTTGCAGATTCAGAAGTTC
AGTCCAGTATCATCAAGGCAGGAACATGGCAGCATCCAGGCAGGCATGGT
GCAGGAGAAGCTGAGTGTTCTACATCTTTATCTGAAGGCTAAGGATCTTA
AGCCCATGCCCACAGTAACACACCTACTACAGTAACACACCTACTCCAAC
AAGGC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAAAAAAGGTGACC
TATAGAAGGATTCCCGAAAAAATTTCTGCTTTCTCAAGAGCTTTTTGTCT
TCCAGCCACAGAGAGTTTGCACTCGGAGCGGGTGGATCATTTTATTTCGA
TTGCTTCTCCAGCACTAGCCCTGAGGGACAGACTTGATGATCTAATGGGT
CTTTTCCATCTCTAATATCTATAATTTTGGCTGTTCTGTGGCAGCTTCTT
ATTGCTTTAAATAAGCCATCTTAATTTAAAAAACATACATCTGGATTTGA
CCTGCATAATATATGTCAAGATATGTGTGTCCCTCTAAAATCTCCCCAGG
GACTTTCTGATTTTTTTTAAGAAACTGACCACATCAGAAAGGAAAAGAAA
ATAGGAGCGGGAAGAGGCTATGAGTCAAGAAAATTTGTGTTTATTTTATT
TAAGTTTTTATTTTTCAGTAATGAAACTATCCCCTAGGCCTCCTTAAATC
GTTTATTGGTTAAAATTTAATCTGAGCCCAAGTGTATTCTTACTTGAGCA
ATTTTTAACTTTAAAATTCTGTTTCTTGGAAGTTGGCCTTCCATTAACTA
CAGTTTGGTTCCCAGACTCCGTTCGTCCTCTCTGACCAACTCTTGGCCTT
AGATCCACTCTGCAACTTCTCAGACTCCACAGTCCAAGAAGTAGCATCTA
TGCATTGTTCCAGATGTCAGCCAATGAGGCTCTGGGCCAGGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_o13.g1 MSMg01no306_o13.g1 CHROMAT_FILE:
MSMg01no306_o13.g1 PHD_FILE: MSMg01no306_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:49 2005
         (284 letters)



>mm_chr17_45223115_45223798
          Length = 684

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgtttattttatttaagtttttatttttcagtaatgaaactatcccctaggcctcctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgtttattttatttaagtttttatttttcagtaatgaaactatcccctaggcctcctta 260

                                                                       
Query: 61  aatcgtttattggttaaaatttaatctgagcccaagtgtattcttacttgagcaattttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcgtttattggttaaaatttaatctgagcccaagtgtattcttacttgagcaattttt 320

                                                                       
Query: 121 aactttaaaattctgtttcttggaagttggccttccattaactacagtttggttcccaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactttaaaattctgtttcttggaagttggccttccattaactacagtttggttcccaga 380

                                                                       
Query: 181 ctccgttcgtcctctctgaccaactcttggccttagatccactctgcaacttctcagact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccgttcgtcctctctgaccaactcttggccttagatccactctgcaacttctcagact 440

                                                       
Query: 241 ccacagtccaagaagtagcatctatgcattgttccagatgtcag 284
           |||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 441 ccacagtccaagaagtaatatctatgcattgttccagatgtcag 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)