BAC Information

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BAC

Clone NameMSMg01-307L12
Chromosome17 (Build37)
Map Location 27,686,223 - 27,686,458
singlet/doubletsinglet
Overlap genenone
Upstream geneErgic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010
Downstream geneHmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307L12.T7 (MSMg01no307_l12.b1)MSMg01-307L12.TJ (MSMg01no307_l12.g1)
ACCAG431998AG431999
length737732
length of high quality
(start - end)
---236 (80 - 315)
definitionCHROMAT_FILE: MSMg01no307_l12.b1 PHD_FILE: MSMg01no307_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:51 2005CHROMAT_FILE: MSMg01no307_l12.g1 PHD_FILE: MSMg01no307_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
ATGCTGTGTGAGGCCTGGCGGCCGCCTGGCTCCACAGAGGGGGTGAACTA
TAGAAGTTTTCAAAAAATTCTCTGATGGNCAGCACCTAGCCCCTCCTTGG
GGGCCCCTGAGCTCGCTCACGGCTGAGGCTGCTGCCAGACTAGAGGTGGG
GGATGGGAACACGCCCCAAAGGACAAGGACAAAGGCAGCAGAGGGGCATG
AGCTTCAGTGGCAGAGCGCACATGCTCCTCACCCAGGCCTGGGAACTGGC
AGGGCACCCTGGATGGTGACCCAGAAACCTGGCTGTCAGCGGCTCCCGCC
TAGCACTGCCCCCAATATTTTGTTATGGCTGGCCAGTGTCAGCATGACTA
TCTCGGGTTTCTCTGTCCACCCCACCACATGATTTAGGGCTGTAGAGGAT
CCCCAGTGCGAGCCCCCCACCCCTAGAGCCCACTGCCCGCTCCCAGGAGA
TTTTATCTTGGCGAGCCACTGATGTGAGGTGCTGTGGTTAGGTCCCTAGA
AAGGATAATGCACAGAGGCTGCCTGAGCCAGTCTCAAGGGAGACTGGGCC
CTGCAAGTCACAGTGAGCCCTGCAGTGTGGACAGGCCTGGCTAGCACAGG
ATGGATGAAGACCACGAAGACGGCAAAGCAGGGCTCTCTGCTGCCCGCTT
CCAGCTAGATTCCCGGCCTATTTCATAGCTCCAGCCCCTAACCCGAATTC
CTTACATGAGCTAGTTTCCCTCCCTTATGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_l12.g1 MSMg01no307_l12.g1 CHROMAT_FILE:
MSMg01no307_l12.g1 PHD_FILE: MSMg01no307_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:51 2005
         (236 letters)



>mm_chr17_27686023_27686658
          Length = 636

 Score =  449 bits (232), Expect = e-131
 Identities = 235/236 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagcacctagcccctccttgggggcccctgagctcgctcacggctgaggctgctgccaga 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 cagcacctagcccctccttgggggcccctgagctcgctcagggctgaggctgctgccaga 260

                                                                       
Query: 61  ctagaggtgggggatgggaacacgccccaaaggacaaggacaaaggcagcagaggggcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagaggtgggggatgggaacacgccccaaaggacaaggacaaaggcagcagaggggcat 320

                                                                       
Query: 121 gagcttcagtggcagagcgcacatgctcctcacccaggcctgggaactggcagggcaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcttcagtggcagagcgcacatgctcctcacccaggcctgggaactggcagggcaccc 380

                                                                   
Query: 181 tggatggtgacccagaaacctggctgtcagcggctcccgcctagcactgcccccaa 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggatggtgacccagaaacctggctgtcagcggctcccgcctagcactgcccccaa 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)