BAC Information

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BAC

Clone NameMSMg01-307O24
Chromosome17 (Build37)
Map Location 41,014,053 - 41,014,340
singlet/doubletsinglet
Overlap gene9130008F23Rik
Upstream geneLOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag
Downstream geneEG435528, Cenpq, Mut, Ldha-ps3, LOC627577
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307O24.T7 (MSMg01no307_o24.b1)MSMg01-307O24.TJ (MSMg01no307_o24.g1)
ACCAG432150AG432151
length747743
length of high quality
(start - end)		704 (44 - 747)294 (75 - 368)
definitionCHROMAT_FILE: MSMg01no307_o24.b1 PHD_FILE: MSMg01no307_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:07 2005CHROMAT_FILE: MSMg01no307_o24.g1 PHD_FILE: MSMg01no307_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGGCCCATACCTCAAACATGATAAAAGCAATCTACAGCAAACCAGT
AGCCAACATCAAAGTAAATGGAGAGAAACTGGAAGCAATCCCACTAAAAT
CAGGGACTAGGCAAGACTGCCCACTTTCTCCCTACCTTTTCAACATAGTA
CTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGAT
ACAAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGA
TAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTG
ATAAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTC
AATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGG
AAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTG
ACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCT
GAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCT
CATGGATTGGCAGGATCAATATTGTAAAAATGGCTATCTTGCCAAAAGCA
ATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAA
CGAATTAGAAGGAGCAATTTGCAAATTCATCTGGGATAACAAAAAAC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACACTCAGCATTAACTCTTTGATTCC
GAGTGTAGTTAATTATTTAACCCACTTTCCTCCTGACAGGATTTAGTTTT
TTTGTTTAATAATGTGGTTTAGAAATCATAAAACCTAAGCAATCAACAAA
ACAACTAATGAAAACTGAACTATTGGTTTTTACTAAGGCTTCTCCTATAC
TTTTGGAAGGACTTATTTTTAGTTTTTTCTATCCTTAGTAGATCAGTAAG
CACATTTTCCAAATTCCTTACAAATGACTTCTACACCATGTCGGGGGTGG
GGTGGGGGGTGGGGNNNNNNNNCCCCCCNCCNNNNCCNNNCNCNCCNNCC
CCCCCCCNNNNNCGGGGGGCCCCCCCCCTTTTTCNNNNNNNNNTNCNTNG
GCGTCGCGCCTTCGTTCGCCGTTTCCCTTTCCTCCTCCTCCCCTTTTTCT
TCGCCCTTTTCCTGTTTCCCTCTCCTTTTCTTCTCCTTCTTTTTTCTTTT
TTTTTCCGCTCTTTTCCTTCTTCTCCTCTTTTTTCGTGTTTCTTTCTTTT
TTTTTTTCTCTTTGCCTCTCTCTTTTCTCGCTTTTTTGTTTTTTTCCTCC
CCGTCTTTCCTTCCTGTTTTCTCTTTTTCCCTCTGTCTCCTTCTTTTCTC
GTCTTTCCCCCTTTCGTTCCCCCTTTTTGCTTTGCCCGCGCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_o24.g1 MSMg01no307_o24.g1 CHROMAT_FILE:
MSMg01no307_o24.g1 PHD_FILE: MSMg01no307_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:07 2005
         (294 letters)



>mm_chr17_41013858_41014551
          Length = 694

 Score =  518 bits (268), Expect = e-151
 Identities = 284/290 (97%), Gaps = 2/290 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acactcagcattaactctttgattccgagtgtagttaattatttaacccactttcctcct 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 483 acactcagcattaactctttgattccgagtgtagttaattattcaacccactttcctcct 424

                                                                       
Query: 61  gacaggatttagtttttttgtttaataatgtggtttagaaatcataaaacctaagcaatc 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 423 gacaggatttagtttttttgtttaataatgtggtatagaaatcataaaacctaagcaatc 364

                                                                       
Query: 121 aacaaaacaactaatgaaaactgaactattggtttttactaaggcttctcctatactttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 363 aacaaaacaactaatgaaaactgaactattggtttttactaaggcttctcctatattttt 304

                                                                       
Query: 181 ggaaggacttatttttagttttttctatccttagtagatcagtaagcacattttccaaat 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 303 ggaaggacttatttttagttttttccatccttagtagatcagtaagcacattttccaaat 244

                                                             
Query: 241 tccttacaaatgacttctacaccatgtcgggggtggggtggggggtgggg 290
           |||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 243 tccttacaaatgacttctacaccatgtcgggggtggggtgggg--tgggg 196


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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