BAC Information

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BAC

Clone NameMSMg01-308H04
Chromosome17 (Build37)
Map Location 60,487,187 - 60,487,488
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043537, LOC100043542
Downstream geneLOC100043549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308H04.T7 (MSMg01no308_h04.b1)MSMg01-308H04.TJ (MSMg01no308_h04.g1)
ACCAG432526AG432527
length715742
length of high quality
(start - end)
351 (46 - 396)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no308_h04.b1 PHD_FILE: MSMg01no308_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:46 2005CHROMAT_FILE: MSMg01no308_h04.g1 PHD_FILE: MSMg01no308_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCACTATTCCGAGAGGATTCGCGGAATTCCTAAACTTGCCCAACAGCTT
CAACACAGTATCAGGATATAAAATTAACTCAAACAAATCACTGTCCTTTC
TCTACCCGAAGGATAAACGGGCTGAGAAAGAAATTACGGAAACAACACCC
TTCACAATAGTCACAAATTATATAAAATAGCTTGGTGTGACTCTAACTAA
GGAAGTGAAAGATCTGTATGACAAGAACTTCAAGTCTCTGAAGAAAGAAA
TTGAAGATCTCAGAGGATGCAAAGATCTCCCATGCTCATGAATTGGCAGG
ATCAAGATAGTAAAAATGGCTATCTTTGCAATCTATAGATTCAATGCCAT
CCCCATCAAAATTCCAACTCAATTCTTCACTGAGTTAGAAAGCCCCACTT
GCAAATTCGACTTCTCATTTCATAACAGATTATTAAATTATAACAGCTTA
TAAGTTTAAGTTAGAGACAGGATCTCTGGGGGTACTGGTTAGTTCATATT
GCTGCTCCACCTATACGGTTGCAGATCCCTTTAGCTCCTTGGGCACCTCC
TGCAGCTCCTCCATTGAGTCGCTTGTGCGCCATCTAATAGCTGACCGCGA
GTCTCCACTTCTGCGTTCGCCCGCCCCAGGGATTATCTTCCCAGACACAG
CTATATTATCGCCCTTTCACGATATATTCTTGCTTGTGCATTCACGGTTG
TCAAGTTTTTGACCC
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTCAGCTGATGGAAGGAACTG
GCTTTTTTCACCATCTAGGTACCCCGAACTATTGGAGAAAGGAGAAACTT
TGAGGTCCAAAAAGTCTACCTCATTACACTGTCCATTGTTATCTGTTCCA
TTAATCTAAACCTTTATGCCAATTTCCATACATTATCAGACTAAAATATC
TCTAACATAGTTATCACTACACACACACACACACACACACACACACACAC
AACACTTGCAATACATTTATCTTTGCATTCAGAAATGCCAGAAGTGACTA
AAAAAATTTCAGCCTTATTTATGCTACCCCCCCCCCATATGATTTGCTAA
AGAAACACATTATGTCACAACCGCAAAAAGAATGAGAAATAAAATCATAC
TTTATAACAAAAAAAGAATGGCGTGCATCACTTAGTCTACACAGTGAAAC
CACAAATGAATAACATCCCCTTAGTGGTTTCCAATAGACCCATGTTATCC
ATTCGAAGTAGCCTCCAAAGATAATGTAACATTTTTATTAATTTAAGAAG
AGGGCAATCAAATGTCGGGGTTCTTGGATGCCATATAATTCAAGTACGCA
CAAGTAAAATGGAACCACAATTCTTATTCATGTGAGTAAATGGATTAGCG
TTGCCCACTTTCAGAATGAGCATGTTTGTCATATATGACAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_h04.g1 MSMg01no308_h04.g1 CHROMAT_FILE:
MSMg01no308_h04.g1 PHD_FILE: MSMg01no308_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:46 2005
         (291 letters)



>mm_chr17_60486987_60487679
          Length = 693

 Score =  468 bits (242), Expect = e-136
 Identities = 281/302 (93%), Gaps = 14/302 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttttcagctgatggaaggaactggcttttttcaccatctaggtaccccgaactattgga 60
           ||||||||||||| ||||| |||||||| ||||||||||||||||||  |||||||||||
Sbjct: 201 cttttcagctgatagaagggactggcttctttcaccatctaggtaccatgaactattgga 260

                                                                       
Query: 61  gaaaggagaaactttgaggtccaaaaagtctacctcattacactgt--ccattgttatct 118
           ||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||
Sbjct: 261 gaaaggagaaactttgaggtccaaaaagtctacctcattacactgtccccattggtatct 320

                                                                       
Query: 119 gttccattaatctaaacctttatgccaatttccatacattatcagactaaaatatctcta 178
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 gttccattaatctaaacctttatgtcaatttccatacattatcagactaaaatatctcta 380

                                                                       
Query: 179 acatagttatcactacacacacacacacacacacacacacacacaca------------a 226
           |||||||||||||||||||||||||||||||||||||||||||||||            |
Sbjct: 381 acatagttatcactacacacacacacacacacacacacacacacacacacacacacacga 440

                                                                       
Query: 227 cacttgcaatacatttatctttgcattcagaaatgccagaagtgactaaaaaaatttcag 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacttgcaatacatttatctttgcattcagaaatgccagaagtgactaaaaaaatttcag 500

             
Query: 287 cc 288
           ||
Sbjct: 501 cc 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 693
Length adjustment: 9
Effective length of query: 282
Effective length of database: 684
Effective search space:   192888
Effective search space used:   192888
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)