BAC Information

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BAC

Clone NameMSMg01-308I05
Chromosome17 (Build37)
Map Location 79,648,331 - 79,648,584
singlet/doubletsinglet
Overlap genenone
Upstream geneCrim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812
Downstream geneLOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308I05.T7 (MSMg01no308_i05.b1)MSMg01-308I05.TJ (MSMg01no308_i05.g1)
ACCAG432573AG432574
length747739
length of high quality
(start - end)
254 (60 - 313)339 (77 - 415)
definitionCHROMAT_FILE: MSMg01no308_i05.b1 PHD_FILE: MSMg01no308_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:51 2005CHROMAT_FILE: MSMg01no308_i05.g1 PHD_FILE: MSMg01no308_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAAA
ATATACCAGAACATTATAAGCAAAGCTGAAGTGGCTTTGTATACATCCAA
CATCTTACTCTTCTTCCTAAGGGAAATTGTTATTATGGCATTGGTCTGAA
CCTTCATGATTTTTTTTTGTTTGTTTTTTGTTTTTTCGAGACAGGGTTTC
TCTGTATATCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCC
TTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAG
GTGTGCGCCACCACTCCCGGCTAAACCTTCATGATTTTAAGTATGTATTA
ATGATTATACTATCACTATGATTCATTTACTTATATAAATTACATGGTAT
GCAAATGACCCCCCATTAATCATCATGCTTTTGAAATAATTCTAAACACA
GAATATATTTGTTTTTACTTCTTTTTGGTAGTTTATTATGTTTCTATTTC
TTGCTTCCATTCACATCCTTATCGTTTGTACATTACATCTACTGGTTTTG
TTTTTATCTGCCTAATTTTTATTTCTTACTCCCCCCCTTTTTATGTTTTT
ATATAGTTCTCCCTCTATCTTCTTTTTTTCTTTTGTTCTGTATCCCTTAC
CCTTCAACTCTTCACATGCCGTTTTTTCAGACGCCCTTTTTTATTCTTTA
TTTTCCCCTTCTCCCCCTTTTTTATTTATTTGTCCTTTCCTACCTCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCACCCTCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCCGTCTGGCGGTTCCTCAGAAAATTGTTACATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAA
GAAGGACACATGCTCCATTTATCCCCCCCCCACCATTATTTGTGGTGGCC
AGAGGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTG
AGTGAGGTAACACATTCACGAAGGAACTCATACCATATGTACTCATTGAT
AAGTGGATATTAGCCCATAATCTAGGATACCCAAGATATAAGATAACATT
TCCTAATCATATGAAACTCAAGAAAATTGAAGACTGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_i05.b1 MSMg01no308_i05.b1 CHROMAT_FILE:
MSMg01no308_i05.b1 PHD_FILE: MSMg01no308_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:51 2005
         (254 letters)



>mm_chr17_79648131_79648784
          Length = 654

 Score =  491 bits (254), Expect = e-143
 Identities = 254/254 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacattataagcaaagctgaagtggctttgtatacatccaacatcttactcttcttccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacattataagcaaagctgaagtggctttgtatacatccaacatcttactcttcttccta 260

                                                                       
Query: 61  agggaaattgttattatggcattggtctgaaccttcatgatttttttttgtttgtttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggaaattgttattatggcattggtctgaaccttcatgatttttttttgtttgtttttt 320

                                                                       
Query: 121 gttttttcgagacagggtttctctgtatatccctggctgtcctggaactcactttgtaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttttttcgagacagggtttctctgtatatccctggctgtcctggaactcactttgtaga 380

                                                                       
Query: 181 ccaggctggccttgaactcagaaatctgcctgcctctgcctcccgagtgctgggattaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaggctggccttgaactcagaaatctgcctgcctctgcctcccgagtgctgggattaaa 440

                         
Query: 241 ggtgtgcgccacca 254
           ||||||||||||||
Sbjct: 441 ggtgtgcgccacca 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)