BAC Information

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BAC

Clone NameMSMg01-308J20
Chromosome17 (Build37)
Map Location 71,200,416 - 71,358,889
singlet/doubletdoublet
Overlap geneTgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik
Upstream geneLOC100043630, LOC623112, LOC623143, Dlgap1
Downstream geneMyom1, Lpin2, Emilin2, LOC100043644, Smchd1, LOC100043879, Ndc80, LOC668740, Spdya, LOC623451, Wdr43, 4632412N22Rik, BC027072, Clip4, Alk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308J20.T7 (MSMg01no308_j20.b1)MSMg01-308J20.TJ (MSMg01no308_j20.g1)
ACCAG432645AG432646
length750754
length of high quality
(start - end)
630 (72 - 701)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no308_j20.b1 PHD_FILE: MSMg01no308_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:59 2005CHROMAT_FILE: MSMg01no308_j20.g1 PHD_FILE: MSMg01no308_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,358,406 - 71,358,889)(71,200,416 - 71,200,706)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGTCCTTGCACTAGCCTCCAAGGGCGACCTGATCTCAACTGCTCA
AGTCACAGGCTGCATGGCCACGCTCAGCTGATGGAGCGCAGAGGAGCAAA
CTCAGGGCTGTGCACTCACAAGCACTCTGCCAGCTATGCTACATCCCCAG
CCTCAGTCTCCCATGCTCTCACCTTGTTTATCATTCCTCAACTTCAAAAG
CATTTTAATTAAGCCCACAGCATGAATGTATGAAAATTTCAAAGAATTAA
AATATTACATTGACAATATTACATTGAAATATAATATTACAATGATAATA
TTGCATTGAAAAAAATAAGTTTGGGGGCTGGAAAGAAGGCTCAGCAGTTA
AGACCAATGGTTGCTCACTCCCGCAGAGGACCTAGGTTCAGTTCCCAGCA
CCTACCTGATGGCTTCCAGGCATACCTAACCCCAGCTCCAGCAGATCCAA
CACACTCCTGACCTCAGAAGGCCCAGACATACATGCAAGCAAAACATTCA
CACATGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTACTCTT
CTGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCGCAACCA
TCTGTAACAAGATCTGACTCCCTCTTCTGGACAGCTACAGTGTACTTACA
TATAATAAATAATTAAATCTTTAAAAAAAAAACATTCACTCATAACAGGA

ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGTGACACTTGGGCTTCCTCCAG
TCGGGATCTTCTGGCAGCCAGCCGGGGGCTCTCCCTGGCCCAACTCCCTC
CCTCCCTACTCAGCTCCTTTGTTTCCCGCTCCACTCGGCGCACCTCGGCG
CTGTCAGAGTGAGAGAGCAGAGGGAAGGTACAGGAGGTCCTGCCTCCGCC
CCCAACCGCCCGCCCCGTCCCCCGCCCGCCCCGCCGCGCTCCTCTGCCCC
TCCCCCGCACCTTCTAGCTCCACAACCCTGTTTCTGGGGGCCGAGATCAC
CCGTCCCTCTACGCGCTGTTCGGTACCTACACCCCCCCCCCCCGCCTGCC
TGCCCGTGGTGAGAGCACCATCTCCACCCCCCAAAAAAAAAAAAAAACAC
TGGGTGCGCGTGTGGGGCCTTTCCTCCCCGGCCTAGCGAAGAGTGCATTT
AGTTTGTAAAGGATGGAGAGAGGTTTAAGGACATCTCCTCTGTCCACCCC
AGAGAAGAAAAGATACCCCCATCCTTGTTTTTGACAGCTGCCCACAACTT
CACTGTCCCTGCTCCAGCCGTCGGAGGTAGCAACTTCTGATTCAAGGCGC
GCGGCACTGAAGGACCAGACCCCCGACCAAAATCATCTTCTTCTACAATG
CGCATCCGCCCTTGATCTGTGTTTGCGGTAATATGTCCCCTTCTTCTCCT
GGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_j20.b1 MSMg01no308_j20.b1 CHROMAT_FILE:
MSMg01no308_j20.b1 PHD_FILE: MSMg01no308_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:59 2005
         (630 letters)



>mm_chr17_71358251_71359280
          Length = 1030

 Score =  820 bits (424), Expect = 0.0
 Identities = 469/484 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccaagggcgacctgatctcaactgctcaagtcacaggctgcatggccacgctcagctga 60
           ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 639 tccaacggtgacctgatctcaactgctcaagtcacaggctgcatggccacgctgagctga 580

                                                                       
Query: 61  tggagcgcagaggagcaaactcagggctgtgcactcacaagcactctgccagctatgcta 120
           |||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct: 579 tggagcgcagaggagcaaactcagggctgtgcactcgcacgcactctgccagctgtgcta 520

                                                                       
Query: 121 catccccagcctcagtctcccatgctctcaccttgtttatcattcctcaacttcaaaagc 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 catccccagcctcagtttcccatgctctcaccttgtttatcattcctcaacttcaaaagc 460

                                                                       
Query: 181 attttaattaagcccacagcatgaatgtatgaaaatttcaaagaattaaaatattacatt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 459 attttaattaagcccacagcatgaatgtatgaaaatttcaaagaattaaaatattatatt 400

                                                                       
Query: 241 gacaatattacattgaaatataatattacaatgataatattgcattgaaaaaaataagtt 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 399 gacaatattacattgaaatataatattacaatgataatattgcactgaaaaaaataagtt 340

                                                                       
Query: 301 tgggggctggaaagaaggctcagcagttaagaccaatggttgctcactcccgcagaggac 360
           |||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||
Sbjct: 339 tgggggctggaaagaaggctcagcagttaagaccaatggttgctcactcttgtagaggac 280

                                                                       
Query: 361 ctaggttcagttcccagcacctacctgatggcttccaggcatacctaaccccagctccag 420
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 279 ctaggttcagttcccagcacctacctgatggcttccaggcatccctaaccccagttccag 220

                                                                       
Query: 421 cagatccaacacactcctgacctcagaaggcccagacatacatgcaagcaaaacattcac 480
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 caaatccaacacactcctgacctcagaaggcccagacatacatgcaagcaaaacattcac 160

               
Query: 481 acat 484
           ||||
Sbjct: 159 acat 156


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no308_j20.g1 MSMg01no308_j20.g1 CHROMAT_FILE:
MSMg01no308_j20.g1 PHD_FILE: MSMg01no308_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:59 2005
         (291 letters)



>mm_chr17_71200216_71200906
          Length = 691

 Score =  516 bits (267), Expect = e-151
 Identities = 285/291 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtgacacttgggcttcctccagtcgggatcttctggcagccagccgggggctctccct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 aagtgacacttgggcttcctccagtcgggatcttctggcagccagccgggggttctccct 260

                                                                       
Query: 61  ggcccaactccctccctccctactcagctcctttgtttcccgctccactcggcgcacctc 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcccaattccctccctccctactcagctcctttgtttcccgctccactcggcgcacctc 320

                                                                       
Query: 121 ggcgctgtcagagtgagagagcagagggaaggtacaggaggtcctgcctccgcccccaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcgctgtcagagtgagagagcagagggaaggtacaggaggtcctgcctccgcccccaac 380

                                                                       
Query: 181 cgcccgccccgtcccccgcccgccccgccgcgctcctctgcccctcccccgcaccttcta 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 cgcccgccccgtcccccgcccgccccgccgcgctcctctgcccctcccccgcaccttcca 440

                                                              
Query: 241 gctccacaaccctgtttctgggggccgagatcacccgtccctctacgcgct 291
           ||||||||||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 441 gctccacaaccctgggcctgggggccgagatcacccgtccctctacgcgct 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)