BAC Information

Click to search

BAC

Clone NameMSMg01-308O06
Chromosome17 (Build37)
Map Location 29,983,773 - 29,983,986
singlet/doubletsinglet
Overlap geneMdga1
Upstream genePnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik
Downstream geneLOC100042885, LOC100042888, Zfand3, Btbd9, EG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308O06.T7 (MSMg01no308_o06.b1)MSMg01-308O06.TJ (MSMg01no308_o06.g1)
ACCAG432838AG432839
length777756
length of high quality
(start - end)
74 (48 - 121)217 (58 - 274)
definitionCHROMAT_FILE: MSMg01no308_o06.b1 PHD_FILE: MSMg01no308_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:20 2005CHROMAT_FILE: MSMg01no308_o06.g1 PHD_FILE: MSMg01no308_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTACTATTCGGAGCGAGCCGCGGAATTCAGCTGTTCCCACAAAATGGCC
TTAGTCTTCCACCTACTTTAGTCTCCCAAGTGCTAGGGTTTGACGCTTTG
AGATTGGGGGGGGGGGGTCTAACATTCTCAGCCTGAGTATAACTACCTGT
GTACCACACATTGATACTTAGATTTATGGCCCGGGGTTCTGCTACATCTC
CCTGAAATACCTGTACATCTGATTCTCAATGTCCAGCCTAATACTGATTA
TTAAACATTGATGCTTTGAAAAGAAAGAACTAATGATACAGTAGTTTTTT
TTTTATGCGAACAACATCCTCTTCAACAAGACACTTCTTATATCCCGTCC
CCCCCCGCAGCAGGATTAATTTGGAAAAAAAGAAAGATTATAAGTTGTTG
AACAACCCCCAAAAAAAAAAATCTATTTTGTGAATTGACATACACACCCT
TGTAGTGCTCCAATTTCTTTTATACTCCCGCGAACATTCTTCAATCATAA
CCCGCGTACTACACCAACATTTCATCCCCTTGATAAAATTTTCATCGTTC
TTCACCACTAGTTTACTAAAATACTACCTCTATATTTATATTCGTCCTCC
TCCCCCTCTAACATACACTCCAAACTTATTATTATTTGTATTTACGTCTC
TACTCCCCCCTATTCTTCGTACCCACGAATCAAATTCTTCTTTATCTCTC
CGTCTCCTCCAGATTTTCAATATATACACGATCATTTGTCATCCATCTTC
GCTGTTAATATATCTACTCATCATTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCAGTTCCCTACATCCTAAGGAATACATAGTAACAGCCTCCCTC
AGAGACAGCTGGACAGGTTAGGTGCCCTGATCCATGGACACTGCCTGGGC
CAGCGCATCTCACTGATGAAGTGTGCTCATTACTAACGCCTGTAGTCAGC
ACCAAACTCACTTCTCTGCATTGAGCTCTTTAAAGCTATGAAAACATCTC
TGAGCTATTGGAACAATTTCTGGGCTGATAGATAGCGTGTGTGTGCGTTT
TTTTTTTTCTGTGTTACCGCCCTTATAAAAAAACGGATTTTGAATAAATC
CGAAACGAAACCCCCTAATATATATGAATGTTTTTTGTGTTGTCCCCCCC
CCACATACCATTAAAAAATTGGGGGGGGCGGGGGGCCTCTTTACCTAACA
ACCCCTTACCCCTATTCCAACCCATATTAACCCCCTCTCTTCCTATTCTC
CACTTCTCTCCCCCCCCCCCTATTTTCTTTTTTCCCCCCTTATTACCATA
CTCACTCCCCCCACTATTTTTACCACCCTCCATATCCCACTCCCCCCTCT
ATCCTTTATCCCCCTCATTTATTCCCCCCCTTTCTATCCTCACCCCTTTT
CATCCCCCCCCCCCCATCTTTTTTTTTTTTCTTATCCTCTATTTTCCTCC
CTCCCTTTCTTTCCCTCCACCCTTTTCCTTATTTTCTTGTCCACTCCCTC
ACCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_o06.g1 MSMg01no308_o06.g1 CHROMAT_FILE:
MSMg01no308_o06.g1 PHD_FILE: MSMg01no308_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:20 2005
         (217 letters)



>mm_chr17_29983573_29984189
          Length = 617

 Score =  398 bits (206), Expect = e-115
 Identities = 212/214 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagttccctacatcctaaggaatacatagtaacagcctccctcagagacagctggacagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cagttccctacatcctaaggaatacatagtaacagcctccctcagagacagctggacagg 355

                                                                       
Query: 61  ttaggtgccctgatccatggacactgcctgggccagcgcatctcactgatgaagtgtgct 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 354 ttaggtgccctgatccatggacactgcctgggccagcacatctcactgatgaagtgtgct 295

                                                                       
Query: 121 cattactaacgcctgtagtcagcaccaaactcacttctctgcattgagctctttaaagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cattactaacgcctgtagtcagcaccaaactcacttctctgcattgagctctttaaagct 235

                                             
Query: 181 atgaaaacatctctgagctattggaacaatttct 214
           ||||||||||||||||||||||||||| ||||||
Sbjct: 234 atgaaaacatctctgagctattggaaccatttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 617
Length adjustment: 9
Effective length of query: 208
Effective length of database: 608
Effective search space:   126464
Effective search space used:   126464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)