Query= MSMg01no309_n11.b1 MSMg01no309_n11.b1 CHROMAT_FILE:
MSMg01no309_n11.b1 PHD_FILE: MSMg01no309_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:31 2005
(317 letters)
>mm_chr17_53532241_53532957
Length = 717
Score = 590 bits (305), Expect = e-173
Identities = 308/309 (99%)
Strand = Plus / Plus
Query: 5 gaattcaatctttaagacctacaatgatggaaagagagaagtgtctccaacaaattgtcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 205 gaattcaatctttaagacctacaatgatggaaagagagaagtgtctccaacaagttgtcc 264
Query: 65 cctgacctctacagacatgtacacacacacacacactcacacacacacacttacacacac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctgacctctacagacatgtacacacacacacacactcacacacacacacttacacacac 324
Query: 125 actcacacacattcacacacacacacaaataataaataaatggaataaaaagttttagta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actcacacacattcacacacacacacaaataataaataaatggaataaaaagttttagta 384
Query: 185 cattcttaacaaaaagaaataaataaaaaattaaaggttgattttaagacctagaacaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cattcttaacaaaaagaaataaataaaaaattaaaggttgattttaagacctagaacaag 444
Query: 245 ttgagcagaaaagcagtgagaattatcaaatttatctgagtcagcaataaatacgcacta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgagcagaaaagcagtgagaattatcaaatttatctgagtcagcaataaatacgcacta 504
Query: 305 ataaaataa 313
|||||||||
Sbjct: 505 ataaaataa 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no309_n11.g1 MSMg01no309_n11.g1 CHROMAT_FILE:
MSMg01no309_n11.g1 PHD_FILE: MSMg01no309_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:31 2005
(288 letters)
>mm_chr17_53700980_53701667
Length = 688
Score = 505 bits (261), Expect = e-147
Identities = 282/291 (96%), Gaps = 4/291 (1%)
Strand = Plus / Minus
Query: 1 caggacagcttgttctgcatcgcaagactgcttaaaaactaaaacaaatttattaaatta 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 614 caggacagcttgttctgcatagcaagactgcttaaaaactaaaacaaatttattaaatta 555
Query: 61 acttttcaga----ttatttatttttattttatgtacattggtattctacctgcttgcat 116
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 acttttcagatcatttatttatttttattttatgtacattggtattctacctgcttgcat 495
Query: 117 gtctgtgtgagggtgccagatcccctggaactggagtagccccattaaatacatttttaa 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gtctgtgtgagggtgccagatcccctggaactggagtagccccattaaatacatttttaa 435
Query: 177 aagaaggaagactttctgagcatggcgatacatgactgtaatcctgatgacaagaaggga 236
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 434 aagaagaaagactttctgagcatggcgatacatgactgtaatcctgatgactagaagggt 375
Query: 237 cctgatgtcctgtcttggagaatataagaggaaaagaaaaagaagaccatg 287
|||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cctgatgtcctggcttggagaatataagaggaaaagaaaaagaagaccatg 324
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
