BAC Information

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BAC

Clone NameMSMg01-311A15
Chromosome17 (Build37)
Map Location 3,590,750 - 3,767,501
singlet/doubletdoublet
Overlap geneNox3
Upstream geneLOC383196, LOC100040029, LOC432993, D030013I16Rik, LOC100040128, 1700024P12Rik, LOC435499, LOC224487, Rbm16, LOC665812, LOC621579, LOC624144, Tiam2, LOC630810, Tfb1m, Cldn20, 1700102H20Rik
Downstream gene4930470H14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311A15.T7 (MSMg01no311_a15.b1)MSMg01-311A15.TJ (MSMg01no311_a15.g1)
ACCAG433655AG433656
length726721
length of high quality
(start - end)		320 (45 - 364)342 (73 - 414)
definitionCHROMAT_FILE: MSMg01no311_a15.b1 PHD_FILE: MSMg01no311_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:47 2005CHROMAT_FILE: MSMg01no311_a15.g1 PHD_FILE: MSMg01no311_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,767,288 - 3,767,501)(3,590,750 - 3,591,092)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGATCTTTCCAAAACTTTTATCATGAATGGGTGTTGGATCTTGTC
AAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGA
GTAACCCAAAATTATACATGCTCAGTTCTCAAATACGCCGTAATGCCCAT
TGGCATGTTTAATTGTCCTAGTTGGTTGTTATTGTGTTACAATAAAAGAA
TCACATCCCACAAACACGAATTATTTAAGTCACCTGCACTGTGCTGGCAT
GTGCAGAGAGCAAGAGCCACCTGCAGTTTGAAAGGGGAAGACCTATGAGC
TGAACTACTGATGATTTAATTCTGTTCTGAACCTCATGACAGTCGCTGTG
AGTGAGACAAATGACTCCCCCCTCTCATACATTAGGATTGTCCCCCATTA
GCTATTTATAGGGAAATCTTTTAAAAATGTATATGCTTAAAAGTTTAAAG
TGTGCTACTCAGGACCTTACATTGATAAATGGATATGCTATAGGTTACTC
TGTTCCTTTACTTCAAGCTTAATTTTATTGCCAGAGGTAACAGAAAATAC
CAAATGTTTCAAGTTTCTGATCCAAACTCTTAAATAAAAGAACTTCTTTT
TCTTAAGTTAAAAAAAAAAATGTATCTCAAATGTTTAAAGGGAAAGTGCA
ATTTTTACCCAAGGAAAAAAATTAAT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTCTTCCTTTCCTCAGTTCTTTTTTTT
TTCTTGCTGCTTTCAGTAGAAGAGACTCACAGTGTTTTAAGCATTGTTGG
AGAGGCATAACACCTCTTCACCCTGCCTCCCCAGGTGATAACAGCGAGGC
AATGTTGACTCTCAGCCTTGCATCTGCCAATATGAAATGAGTAGCAAAGC
TAAAAGGCTATCCCATCCCACCCCACCCCACCCCACCTCACCCCACTGTA
CCACATCCTACCCCACCACATCCCATCCCACCCCTTGCCACCACACCCCA
CCCCGTGTCTTTTTTTTTTATCCCATTCCACCCTACCCCACTGCATCCCA
CCCCACTGTACCCCACCCCACCCCACTGAATCCTACCCCATCTCACCACA
CCCTATTGCACTCCTGTTGTAGTAGTGCCTTTCTATCTGAGACAGTCAGA
GTCATCTATCCTCATTTCAAAACCACTCAAAATGGTTAACCACCTTCAGT
AACTTTCTCAACTTTTCCAAGTTCTTAGACCTTATGTTTTTCTCCATTGC
CAGTTGAATGAAGAAATATGACACTCTTCAGTGCCTGAACAGGCCATCGA
AAGTAGGGCAGGCACCAGAAGTTCCCAAAAACCCTTGAGTTCCTGAGCCT
AACCAAGGCTGGCCCAAGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_a15.b1 MSMg01no311_a15.b1 CHROMAT_FILE:
MSMg01no311_a15.b1 PHD_FILE: MSMg01no311_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:47 2005
         (320 letters)



>mm_chr17_3766980_3767699
          Length = 720

 Score =  383 bits (198), Expect = e-111
 Identities = 210/214 (98%)
 Strand = Plus / Minus

                                                                       
Query: 107 gtaacccaaaattatacatgctcagttctcaaatacgccgtaatgcccattggcatgttt 166
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 522 gtaacccaaaattatacatgctcagttctcaaacacgccgtaatgcccattggcatgttt 463

                                                                       
Query: 167 aattgtcctagttggttgttattgtgttacaataaaagaatcacatcccacaaacacgaa 226
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 462 aattatcctagttggttgttattgtgttacaataaaagaatcacatcccacaaacatgaa 403

                                                                       
Query: 227 ttatttaagtcacctgcactgtgctggcatgtgcagagagcaagagccacctgcagtttg 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ttatttaagtcacctgcactgtgctggcatgtgcagagagcaagagccacctgcagtttg 343

                                             
Query: 287 aaaggggaagacctatgagctgaactactgatga 320
           ||||||||||||| ||||||||||||||||||||
Sbjct: 342 aaaggggaagacccatgagctgaactactgatga 309


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no311_a15.g1 MSMg01no311_a15.g1 CHROMAT_FILE:
MSMg01no311_a15.g1 PHD_FILE: MSMg01no311_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:47 2005
         (342 letters)



>mm_chr17_3590550_3591292
          Length = 743

 Score =  592 bits (306), Expect = e-173
 Identities = 333/352 (94%), Gaps = 19/352 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcttcctttcctcagttctttttttttt-cttgctgctttcagtagaagagactcaca 59
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 tttcttcctttcctcagttctttttttttttcttgctgctttcagtagaagagactcaca 260

                                                                       
Query: 60  gtgttttaagcattgttggagaggcataacacctcttcaccctgcctccccaggtgataa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgttttaagcattgttggagaggcataacacctcttcaccctgcctccccaggtgataa 320

                                                                       
Query: 120 cagcgaggcaatgttgactctcagccttgcatctgccaatatgaaatgagtagcaaagct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagcgaggcaatgttgactctcagccttgcatctgccaatatgaaatgagtagcaaagct 380

                                                                       
Query: 180 aaaaggctatcccatcccaccccaccccaccccacctcaccccactgtaccacatcctac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaggctatcccatcccaccccaccccaccccacctcaccccactgtaccacatcctac 440

                                                                       
Query: 240 cccaccacatcccatcccaccccttgccaccacaccccaccccgtg-----tc----ttt 290
           ||||||||||||||||||||||||||||||||||||||||||||||     ||    |  
Sbjct: 441 cccaccacatcccatcccaccccttgccaccacaccccaccccgtgccacctcaccct-- 498

                                                               
Query: 291 tttttttatcccattccaccctaccccactgcatcccaccccactgtacccc 342
                  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 -------atcccattccaccctaccccactgcatcccaccccactgtacccc 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 743
Length adjustment: 9
Effective length of query: 333
Effective length of database: 734
Effective search space:   244422
Effective search space used:   244422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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