BAC Information

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BAC

Clone NameMSMg01-311A22
Chromosome17 (Build37)
Map Location 73,959,788 - 73,960,157
singlet/doubletsinglet
Overlap geneGalnt14
Upstream geneYpel5, Lbh, Lycat, LOC668709, Capn13, LOC100043666
Downstream geneEhd3, LOC240160, Xdh, Srd5a2, Memo1, EG668716, 2810410M20Rik, LOC668773, LOC668775, Spast, Slc30a6, Nlrc4, LOC100043883, LOC624159, Yipf4, Birc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311A22.T7 (MSMg01no311_a22.b1)MSMg01-311A22.TJ (MSMg01no311_a22.g1)
ACCAG433668AG433669
length719721
length of high quality
(start - end)
378 (44 - 421)291 (76 - 366)
definitionCHROMAT_FILE: MSMg01no311_a22.b1 PHD_FILE: MSMg01no311_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:48 2005CHROMAT_FILE: MSMg01no311_a22.g1 PHD_FILE: MSMg01no311_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCG
GAATTCTGGCTTCCATGCTGCTAGGATGAGGCTTTTAAAGTCCACCCCCA
CAGTGCCAAGCCTAGTCCCAAAAGGCCACACCTTCTAATAGTGCCACTCC
CTAGGCTGAGCATCTACAAACCATCACACCATCTTAGGACAGTTTGTGAC
CTACACTATGAGGCCTGCCGTCAGGACTAGGTTCCTGCAGGCTGGCTACC
TCTGCCCTTAACCACTAGGCTTCCCCAACACTTAGTCCTTGCGCACACCT
CCCCAATCCTATGTCTTTCCTCACCTCTACTGGAAGGGTTGCAAAATGTT
AGTTAGGGCTCTGCTTTCTCTCCAGAATCCCCTCCCGAGGTTCCACGCCC
ACTCAAAGCTTCTGTCTCAACCCCCCACCACGGAAACTCTCAACAGAAAC
TGACCTCGGTCTCTCAATGTCCAACAGCTCCCATTTGTCAGGAGTTCGAG
AGTCCACAGCTGGCGTTTACACCTACTTTCATGCACAATATTCCACTTAA
GCTACATCAGAATCCTGTGACGCAGGCCAGGCAAGGAGCGCTATTCTCAT
TTCTTTTTTTTTTTTTTTTTTCCATTTTTTATTAGGTGTTTAACTCATTT
ACATTTCCAATGCTATACCAAAAAGTCCCCATATCCATCCACCCCCACTT
CCCTGCCCAACCATTTCCC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACACCTGAGGAATACCGAATGGCAG
AGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGTCGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGAATGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGAAAATTGTTTATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGTTANGATCCCCCCCCCCCCCCACCAGGTAAGA
AGGACACATGCTCCANTATGCCCCCCCCCCCAAAAAAAATAATAACCGGA
GGGTGGGGGGAACCTANATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCATAAAGAAACTCACACAATATGAATTCACTGATAAG
TGGATATTAGCCCCAACCTTAGGATACCCAAGATATAACATATAATTTGC
TAAACCCTTGAAATTTCAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_a22.b1 MSMg01no311_a22.b1 CHROMAT_FILE:
MSMg01no311_a22.b1 PHD_FILE: MSMg01no311_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:48 2005
         (378 letters)



>mm_chr17_73959581_73960358
          Length = 778

 Score =  700 bits (362), Expect = 0.0
 Identities = 368/370 (99%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattctggcttccatgctgctaggatgaggcttttaaagtccacccccacagtgccaag 67
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctggcttccaggctgctaggatgaggcttttaaagtccacccccacagtgccaag 267

                                                                       
Query: 68  cctagtcccaaaaggccacaccttctaatagtgccactccctaggctgagcatctacaaa 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cctagtcccaaaaggccacaccttctaatagtgccactccctaggctgagcatctacaaa 327

                                                                       
Query: 128 ccatcacaccatcttaggacagtttgtgacctacactatgaggcctgccgtcaggactag 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ccatcacaccatcttaggacagtttgtgacctacactatgaggcctgccgtcaggactag 387

                                                                       
Query: 188 gttcctgcaggctggctacctctgcccttaaccactaggcttccccaacacttagtcctt 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gttcctgcaggctggctacctctgcccttaaccactaggcttccccaacacttagtcctt 447

                                                                       
Query: 248 gcgcacacctccccaatcctatgtctttcctcacctctactggaagggttgcaaaatgtt 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gcgcacacctccccaatcctatgtctttcctcacctctactggaagggttgcaaaatgtt 507

                                                                       
Query: 308 agttagggctctgctttctctccagaatcccctcccgaggttccacgcccactcaaagct 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 agttagggctctgctttctctccagaatcccctcccgaggttccacgcccactcaaagct 567

                     
Query: 368 tctgtctcaa 377
           | ||||||||
Sbjct: 568 tatgtctcaa 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)