BAC Information

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BAC

Clone NameMSMg01-311B04
Chromosome17 (Build37)
Map Location 40,096,810 - 40,097,126
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043297, LOC100043300, EG668200, LOC672857, LOC627695
Downstream geneLOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311B04.T7 (MSMg01no311_b04.b1)MSMg01-311B04.TJ (MSMg01no311_b04.g1)
ACCAG433678AG433679
length777787
length of high quality
(start - end)
321 (48 - 368)241 (57 - 297)
definitionCHROMAT_FILE: MSMg01no311_b04.b1 PHD_FILE: MSMg01no311_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:49 2005CHROMAT_FILE: MSMg01no311_b04.g1 PHD_FILE: MSMg01no311_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:49 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTAGGAATGGACAAGTACAAGTGGACATGAGTGGGTTTGAGA
ATAACAAGTTTTATGTATGTTATAACCTATAAACTAATAAGAGTGAGAAA
AAATATTTGTTCCTACTTTAGCCAAAATTACCACCATAATTAACACAAAT
GACAGAAAAGAATAACATGCATATGTGATATTTTGGAAGTATAACTCTTA
AACACTATTGGTAGATTGTAATAGTGCAGCCATTTCGAAATCAATCTTTG
AGTATTCAAAAATATCAAACTAGAAATACCATTTGATATAGTCATGTATT
CTGTGTCCAAATACCTATTCTTTTTTTTCTACCCCTCTGCCTTAATATGT
ACACATTCATGTTTATTTCTGCTGCGCTCACAATAAAAAAGAAAAAGAGT
CGATCGAGAGCTCCATAACCTGAATAATAAATAATAAATTTTGGTACATG
TACATACACAATGGTTTATTACTGAAACAACCATGAACAAACAAAGCTAA
GTCCTGAAATTTTGCAAGCAGATTGTCCGTCTGTGAAGGCTGCCACCCCA
TCAAATGAATCATAACCAGTTGCAGAAATTTTTATAAGCCTAAATATTGG
TATATTACCCTGGCAGTGGTACCTTTACCGGAAATAAACATGTCAGGTAC
GCGATTTTCTCTTTCTCTTATAGGAAGATATTATCAAACTTCCCTTGCGG
TATAAATAATCTCAGATATTCCTATCT
TGGCGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAATGTGATGCTTGCTTTGAAACTTAACCACTACTGACTATAACC
ACTCCACTCTCTACCGGATGAGAAAGGTAAACAGCAACCCAGCTACAAAA
CCTTTGATATAAAATGTTGACTTAACTGCAAGATACTCTTGTGTAAACAT
GTTGAATAAATCAAAAATTATCCCATTGATTTTAAGGACCTCTAGATGGC
ATGTTATTTTGCCTAAGACTGTTTGGTAGCCAAGAACATGATATTAGATA
TGCCATTTTTTTTTGTGGCAAAACTAATAAAAACGCGCCACCATTTGGAG
ATGAGCTTCAAAGACGGGGTCCCCTGATTTTGTTTTTTTTATAAATTTGG
NTTTTCCCCCCCTCAAAATTTTACTCNTAAAAGGGGGCCTTGCCTTGGGG
TCTTTTCCTCCCCTTTATTCCCCCGCCTTTCGTCCCTTTTTCTCTCTCTT
TCTCAACATAACGCAACCCACCAAATCCAGAGCGCCTAGTCTTAAAATCT
CATTTCTTTTTTGCTCCAGACTTCAAGACATCCATGTATACATAATCTCT
TCTTTCCCCCTTTTCCCCTCTTTCTCTTTTCCTCTCTTTTTACTCCCCCC
ATCTTTTCTCATTACCCTATTCATATATCCCGTACCCAATTTATTATTTC
TAACCGGCCCACTTATTATCCCGCGGATTATTTTATTTACGGNTACATTT
CCCGGCATTTATTCTTTTTTTTTATACCTATATCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_b04.b1 MSMg01no311_b04.b1 CHROMAT_FILE:
MSMg01no311_b04.b1 PHD_FILE: MSMg01no311_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:49 2005
         (321 letters)



>mm_chr17_40096607_40097327
          Length = 721

 Score =  418 bits (216), Expect = e-121
 Identities = 294/320 (91%), Gaps = 6/320 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactaggaatggacaagtacaagtggacatgagtgggtttgagaataacaagtt 63
           ||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 204 ggaattcgctaggaattgacaagtacaagtggacatgagtaggtttgagaataacaagtt 263

                                                                       
Query: 64  ttatgtatgttataacctataaactaataagagtgaga-aaaaatatttgttcctacttt 122
           ||||||| |||||||| | ||||| ||||| ||||| | |||||||||||||||||||||
Sbjct: 264 ttatgtacgttataacatctaaaccaataacagtga-ataaaaatatttgttcctacttt 322

                                                                       
Query: 123 agccaaaattaccaccataa-ttaacacaaatgacagaaaaga-ataacatgcatatgtg 180
           |||||||||||||||||| | ||| |||||||||||||||||| | || |||||||||| 
Sbjct: 323 agccaaaattaccaccatcactta-cacaaatgacagaaaagaca-aatatgcatatgta 380

                                                                       
Query: 181 atattttggaagtataactcttaaacactattggtagattgtaatagtgcagccatttcg 240
           |||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 381 atatgttggaagtacaactcttaaacactattggtagattgtaatattgcagccattttg 440

                                                                       
Query: 241 aaatcaatctttgagtattcaaaaatatcaaactagaaataccatttgatatagtcatgt 300
           |||||| |||||||||| ||||||||||||||||||||||||||||||||||||| || |
Sbjct: 441 aaatcagtctttgagtagtcaaaaatatcaaactagaaataccatttgatatagtgattt 500

                               
Query: 301 attctgtgtccaaataccta 320
           |||| |||||||||||||||
Sbjct: 501 attccgtgtccaaataccta 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)