BAC Information

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BAC

Clone NameMSMg01-311F12
Chromosome17 (Build37)
Map Location 54,198,571 - 54,198,726
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531
Downstream geneSlc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117, EG629178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311F12.T7 (MSMg01no311_f12.b1)MSMg01-311F12.TJ (MSMg01no311_f12.g1)
ACCAG433871AG433872
length755758
length of high quality
(start - end)
164 (4 - 167)245 (76 - 320)
definitionCHROMAT_FILE: MSMg01no311_f12.b1 PHD_FILE: MSMg01no311_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:10 2005CHROMAT_FILE: MSMg01no311_f12.g1 PHD_FILE: MSMg01no311_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAGGATCCGCGGAATTCCAGTGTGATAGTAATTTTAATGGATTTAATAAT
AGAAAATATCTTTAAACAAATGGATGAGAGAAATTTGGTGAATAAGGATA
GAAAACAAGATGTGGTCTTGAGAGTATACAGGTTTGGGGGAAGAGTTTAA
GGAGTTTGCTGTAAATGTGTTGTTATGTTATCATTTTTACATGAGTATTA
TTGCTCTTTTTTCTTTTTTTTTGATTTCTTTGCGTGTTGTTGCTTTTCTC
CTTTTTGCTCTTTTATTAGTAATGTATCATATTTTTTTTTTTCTATTCTC
CCCTCTCCTTTATATGATGAATATTTAGATGAGTTCCCCCCCCCCCCCCC
CCCATTTTTGTTTTTTTTTTTTTTTTGTTTTTTTTTTCTCCCCCCCAAAA
AAAAAAAAAAATTTTGGTGGGGGGGGGGTGGTTTCTCCTTTTTTATTCCA
TACTTCTATTCTTTTTAATACTTTACTTTATACTCTCTTTTTCGTCATTC
TTCTATTCTCTCACTCTCCATTATTTTCATCCTTTTGCTCCCCTCTTTTT
TATTCTTCTCTTCATTTTCCTTTCTCACATATGTTTTACTTCCTTTTTTT
CCGCCGAGATTCGTTTTTCTCTCTTCTCTTCTATTTTTTTATATCTTTTT
CACATCTTTCTCTCGCTATATCTTCTTTGCCCCCCTCTTTTTTGTTATGG
TTTTATATCCCCTTTCCTCCATTTATTCTTTATCCTCCGCATTTGCTTTT
TTACN
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGTCACTGGACCAAGAACATGCTA
TTTTGGGAGAAAGGGTCTGTACTTGTGTTGACCGAAAAGGAGACTAGGCT
CTGGACCCCTTCCAAAGTGATATGGATCACATATGACAGGGAAAGATCAC
CTGAAGATCTCGAGAATTTTGAGAAAATCAATTAAAACAGATAAATTGAT
CTGCTGATTCCTTGACAAAGGAATAGCCTAATTAAGTGGCTTAGACATAA
AAACGCCTCTAGCCAAAACTTCTTTTATAATGAGACAATAAATCTTATTA
ATTATGGGTCTTTAAGTCGTTTCCCCACCCCCCCTCCTATGGCATGAATA
TTTATTACTTCTGTTTTTCCCCCCCCAAAAAAAAAAAAACAGTGCGGGGG
GGGGGGGGAATTACATTTCCATCTTTACCTGAATTTTTGCACCTTGCACC
ATCTATCTTATTGTTTTTTTACCACTTGTTTTGTGACATTTCTGTTTTAT
GCTATCGCTGATTTTCTTATCGATATTCGTCCTCTTGTTTATGCCAATCC
GCATTTGACGTTTCCCGTCCTCAGTTCCGCCTGTTGTTTCTCTTACACAT
CTTTTTTCTCCATACTTATTTTTTAAGATTCCCCTACGTCTTTATCCTAT
ACTTATTATATATTCAAAATGCTTGCCACTTTGATTCAATATATCGTACC
GTCCGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_f12.b1 MSMg01no311_f12.b1 CHROMAT_FILE:
MSMg01no311_f12.b1 PHD_FILE: MSMg01no311_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:10 2005
         (164 letters)



>mm_chr17_54198363_54198926
          Length = 564

 Score =  279 bits (144), Expect = 8e-80
 Identities = 153/156 (98%)
 Strand = Plus / Plus

                                                                       
Query: 9   gaattccagtgtgatagtaattttaatggatttaataatagaaaatatctttaaacaaat 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattccagtgtgatagtaattttaatggatttaataatagaaaatatctttaaacaaat 268

                                                                       
Query: 69  ggatgagagaaatttggtgaataaggatagaaaacaagatgtggtcttgagagtatacag 128
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 269 ggatgagagaaatttggtgaataaggatagaaaacaagatgtggtcttgggagtatacag 328

                                               
Query: 129 gtttgggggaagagtttaaggagtttgctgtaaatg 164
           || |||||||||||||||||||||||||| ||||||
Sbjct: 329 gtctgggggaagagtttaaggagtttgctctaaatg 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)