BAC Information

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BAC

Clone NameMSMg01-311J01
Chromosome17 (Build37)
Map Location 18,758,947 - 18,759,493
singlet/doubletsinglet
Overlap genenone
Upstream geneLnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070
Downstream geneVmn2r-ps115, Vmn2r-ps117, LOC100042183, EG627367, EG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311J01.T7 (MSMg01no311_j01.b1)MSMg01-311J01.TJ (MSMg01no311_j01.g1)
ACCAG434031AG434032
length723730
length of high quality
(start - end)		550 (44 - 593)356 (74 - 429)
definitionCHROMAT_FILE: MSMg01no311_j01.b1 PHD_FILE: MSMg01no311_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:27 2005CHROMAT_FILE: MSMg01no311_j01.g1 PHD_FILE: MSMg01no311_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:27 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCGTGGCAAATTCAGCTGCTGTAATCCTCTCAAACTTTCATTTACTG
ATGCAGGCAAAAAGATTTCTCTAGAGACATGGCTCCGGGGTATAGAGTGG
TGTCTTCTTATGTATGTTTCTAATAAGAACCCTGGATTAATTTTCAAAAT
AAAATTGCTCAAAATCCCTCCCAACATTAAAAAACAAATTGCCATAGGAT
AATCCTACACTTCATCCAGCAGCACCTAAAGAGCCTGGGGCCCCTAAGGA
GACTGTTCCATCTTAAACCAATGTCCCTATTACCTTCTTAGAACCCACAC
TCCCTGCAGGCCTGTCCTCCTCAGCAGAACTTATTGTTATCATGATTAAT
GCCTCACTACACGCCATTCATGAGGCCAATTCTACCCTTGTTAGGGATTG
TTGGATTTGTTATTTGTGCCAGCCTCCTTTTTATGAAGGAATAGTACTTT
TTGGAGAGGTGATTGCCACCAATGATACTTCCTTTCTGAGATGGCATTTG
GAGTCTAAAGAAGGGCTGACTCTTGGCCGAATATCTGGAATGGGTCTCTA
GCTTTTCAGACCCCAGAAGGCTCCCCCCTTGTCCCTGTTTGAAGTGTGTA
ATCAAACCGTGGTTGTTAATAATATCTTTCAATATGTTATGGCCCCTAAT
AACGCTTAGTTTGCCTGCTCTTN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAATATTGTTTAAGGGGCATGATGTAG
GTTCCTCACAGTTTCCCTGGCTTGTTAAGATTCCTATATTATTAGGGATT
ACAGTAGCCCCAAATAAGGCAGTGACATTTTTATGAAATCTAGTTTGGCA
CTCTTTTTGCCACTGGTACTCTTTCATGCCAGGTAGATATCCAGTTGGAT
TTCTGTTCTCAGTGGGACCAGGAGCATTAAAATTTATGGGACATCCTGCC
TTACTGAGGCAGTGTTTGCTGTCATGTCCACGCTTTTTCCCTGAATGATT
TTGTTAGCCAAACCTGATTTACTAAATATTCTGTCGGTGATTAATAAGAT
TATGGATAGTGTTGTGGCCTCCTGAGGTTTTATAATGAAAATGCTTTGAG
AATATGAAGTAGAAATCTCAGCAAAAGCTTTCAATAAATTTCAGACTTTT
AAACCGTCTTAATCAGAGATTATCAAGTGGGTGTAGCATTTTCAAAGAAC
ATATCCTTTANAACAATATCTTTTGCTTCGGAGCCTCTATCCGTTGAGCA
AGTGTTGTCCTTAATATATTTTTTGGTTTCTTTATTATATTAACAAGCCT
TTTGAAAACATGGTATCTCTACTAGGCAAGCATCTCCATGCTTCTGGATC
TGCAGCTGCATTTTTTACTAGAACTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_j01.b1 MSMg01no311_j01.b1 CHROMAT_FILE:
MSMg01no311_j01.b1 PHD_FILE: MSMg01no311_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:27 2005
         (550 letters)



>mm_chr17_18758744_18759693
          Length = 950

 Score = 1027 bits (531), Expect = 0.0
 Identities = 543/547 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcgtggcaaattcagctgctgtaatcctctcaaactttcatttactgatgcag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcgtggcaaattcagctgctgtaatcctctcaaactttcatttactgatgcag 263

                                                                       
Query: 64  gcaaaaagatttctctagagacatggctccggggtatagagtggtgtcttcttatgtatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcaaaaagatttctctagagacatggctccggggtatagagtggtgtcttcttatgtatg 323

                                                                       
Query: 124 tttctaataagaaccctggattaattttcaaaataaaattgctcaaaatccctcccaaca 183
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttttaataagaaccctggattaattttcaaaataaaattgctcaaaatccctcccaaca 383

                                                                       
Query: 184 ttaaaaaacaaattgccataggataatcctacacttcatccagcagcacctaaagagcct 243
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 384 ttaaaaaacaaattgccataggataatcctatacttcatccagcagcacctaaagagcct 443

                                                                       
Query: 244 ggggcccctaaggagactgttccatcttaaaccaatgtccctattaccttcttagaaccc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggggcccctaaggagactgttccatcttaaaccaatgtccctattaccttcttagaaccc 503

                                                                       
Query: 304 acactccctgcaggcctgtcctcctcagcagaacttattgttatcatgattaatgcctca 363
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acactccctgcaggcctgccctcctcagcagaacttattgttatcatgattaatgcctca 563

                                                                       
Query: 364 ctacacgccattcatgaggccaattctacccttgttagggattgttggatttgttatttg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctacacgccattcatgaggccaattctacccttgttagggattgttggatttgttatttg 623

                                                                       
Query: 424 tgccagcctcctttttatgaaggaatagtactttttggagaggtgattgccaccaatgat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgccagcctcctttttatgaaggaatagtactttttggagaggtgattgccaccaatgat 683

                                                                       
Query: 484 acttcctttctgagatggcatttggagtctaaagaagggctgactcttggccgaatatct 543
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 684 acttcctttctgagatggcatttggagtctaaagaagggctgactcttggccaaatatct 743

                  
Query: 544 ggaatgg 550
           |||||||
Sbjct: 744 ggaatgg 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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