BAC Information

Click to search

BAC

Clone NameMSMg01-311L24
Chromosome17 (Build37)
Map Location 62,826,952 - 63,008,042
singlet/doubletdoublet
Overlap geneEfna5
Upstream geneLOC100043560
Downstream geneFbxl17, Ppia-ps17_1026.1, LOC638867
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311L24.T7 (MSMg01no311_l24.b1)MSMg01-311L24.TJ (MSMg01no311_l24.g1)
ACCAG434162AG434163
length729746
length of high quality
(start - end)		317 (49 - 365)249 (79 - 327)
definitionCHROMAT_FILE: MSMg01no311_l24.b1 PHD_FILE: MSMg01no311_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:41 2005CHROMAT_FILE: MSMg01no311_l24.g1 PHD_FILE: MSMg01no311_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,007,730 - 63,008,042)(62,826,952 - 62,827,200)
sequence
ATGTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATATAGGCCAATTCCACATAGGCCCTGGAGAATTCAGTTATT
GGAAACCAGGGCGTTCTAGGGCTGAGAAGATAACTTTCACAAAGTTACCA
TCAGCTCAGGTATCTCACTTAACATTTATCAAGTAGTTAAAAAGCATCAA
ATCACTATTTTCCACAACGCTCTCCTTGAGTTGGTGACAAAAGAAGAGGG
AACGAAGAGTGGCCTAGAATTGTGCCAGAGACTACCATCCCACAGCGGAT
AGAGTGGCATGCTTAGAAGTGAGCAGCTTGTTGGTTGGTTTATTGGTCTG
ATAGACTCCCACGTACTTTGATTTTATCCCCGNCCTTNACCCTGTTCCTT
GGATTTTGGNTGTATAAGNTACTTGCCCACAAAATTTACTGAAAAAACGG
GGGGGGGGGGGTGGATATATGCATCAGGGATTCTGCCCCATGTACTTAAG
AGGCCCCTAAAACTCCAGATGGCTTAGAGCCTGCTCCCCAGCTTTGTGAG
AATCTCCTGGGGAGTTGATGGAGTGAGAAAGAGTCCATTCTGGCTTGTAA
ATGTGACCCCCGTTCTATACACCTTGAGTGCATGATGTCAACCTTTTATT
TTTGGTCCCGAAACTCCCGCTTGAAACATATTTGTAATGAACTGGGATCG
TGTCTGTCCCGGTAAGCCTCTGCTTGGGC

AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTGCAGACTTAGTTAGCAC
CCTCTATACTTACTAGTAATATAAATCTAGCTAGATTTTGGAAATTTTCA
GTTTTCTAGACTCACTGAGCAGTTTTAGTAACTTATGGAAGTATTTTTGT
TTGGCCCAAGTTATATTTGTAGCTGAAGAAGATATAATCATATGATTCTG
ACCAAATAGATGGTTAGAATTATAACTAGCCACCATAATTACCAAAGAGT
ATATTAAGGAAAAAGCTTCTACCGATATTTTTTTTTTTACTAACATTTTC
TAGNATCATTGGGAATTTTTGGGTGGTTCTAAANACGGAAACGCGTTTTT
TGTTTTTTAGAGANAGANNGNNNNNNNCNAAAAAAAATTTAAAACNTAAA
GGTTTNTTGTTCTNNTGCNTTTTCTCCCCCTTTCCCCCTCGAGTTGCTTA
TCTGATTTCGAGGGCTCCGATTTTCCGACGGCAGCCCCTCAGGACATCCT
TTCCTCTAGAGTTGCTTGCTTCCCGACTATGTTCTGAGCCTTCCCCCTGA
GCCACGCTGACGGGCACGAAAGCTGTGTGCGGATATGATGACGTGGCGAC
TCTCTAACAGCGCGCGGGGCCCTTATAACCTTTTTTTTTTTCGCGTACGG
AAATAGGAACCCAATACCCCGCCCTTTCCTTATTTTATCCTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_l24.b1 MSMg01no311_l24.b1 CHROMAT_FILE:
MSMg01no311_l24.b1 PHD_FILE: MSMg01no311_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:41 2005
         (317 letters)



>mm_chr17_63007526_63008242
          Length = 717

 Score =  559 bits (289), Expect = e-164
 Identities = 307/313 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatataggccaattccacataggccctggagaattcagttattggaaaccagggc 64
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | 
Sbjct: 517 gaattcatataggccaattccacatagaccctggagaattcagttattggaaaccagagt 458

                                                                       
Query: 65  gttctagggctgagaagataactttcacaaagttaccatcagctcaggtatctcacttaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gttctagggctgagaagataactttcacaaagttaccatcagctcaggtatctcacttaa 398

                                                                       
Query: 125 catttatcaagtagttaaaaagcatcaaatcactattttccacaacgctctccttgagtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 catttatcaagtagttaaaaagcatcaaatcactattttccacaacgctctccttgagtt 338

                                                                       
Query: 185 ggtgacaaaagaagagggaacgaagagtggcctagaattgtgccagagactaccatccca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ggtgacaaaagaagagggaacgaagagtggcctagaattgtgccagagactaccatccca 278

                                                                       
Query: 245 cagcggatagagtggcatgcttagaagtgagcagcttgttggttggtttattggtctgat 304
           |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| 
Sbjct: 277 cagcggatagagtggcatgcttagaagtgagcagcttggtgggtggtttattggtctgac 218

                        
Query: 305 agactcccacgta 317
           |||||||||||||
Sbjct: 217 agactcccacgta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no311_l24.g1 MSMg01no311_l24.g1 CHROMAT_FILE:
MSMg01no311_l24.g1 PHD_FILE: MSMg01no311_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:41 2005
         (249 letters)



>mm_chr17_62826752_62827400
          Length = 649

 Score =  451 bits (233), Expect = e-131
 Identities = 245/249 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgtgcagacttagttagcaccctctatacttactagtaatataaatctagctagattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgtgcagacttagttagcaccctctatacttactagtaatataaatctagctagattt 260

                                                                       
Query: 61  tggaaattttcagttttctagactcactgagcagttttagtaacttatggaagtattttt 120
           || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tgtaaattttcagttttctagactcactgagcagttttagtaacttatgtaagtattttt 320

                                                                       
Query: 121 gtttggcccaagttatatttgtagctgaagaagatataatcatatgattctgaccaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttggcccaagttatatttgtagctgaagaagatataatcatatgattctgaccaaata 380

                                                                       
Query: 181 gatggttagaattataactagccaccataattaccaaagagtatattaaggaaaaagctt 240
           || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaggttagaattataactagccaacataattaccaaagagtatattaaggaaaaagctt 440

                    
Query: 241 ctaccgata 249
           |||||||||
Sbjct: 441 ctaccgata 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |