BAC Information

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BAC

Clone NameMSMg01-311M14
Chromosome17 (Build37)
Map Location 30,363,434 - 30,363,557
singlet/doubletsinglet
Overlap geneBtbd9
Upstream geneCpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1, LOC100042885, LOC100042888, Zfand3
Downstream geneEG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311M14.T7 (MSMg01no311_m14.b1)MSMg01-311M14.TJ (MSMg01no311_m14.g1)
ACCAG434188AG434189
length765767
length of high quality
(start - end)
124 (198 - 321)---
definitionCHROMAT_FILE: MSMg01no311_m14.b1 PHD_FILE: MSMg01no311_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:44 2005CHROMAT_FILE: MSMg01no311_m14.g1 PHD_FILE: MSMg01no311_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGCTTTTCCAAACAGCGGATGTCCACTTCCTATACCTTTGCCT
TAGCAGGGTTCTTACATGTTATCCCTCCTGGTCTGTGACGTACGGAAAGG
GTATCCTACTATCTGAAATCCTTGATGTCCTTTAACCCACTGTGACGTGC
ATCCAACATGGATGGGACCACTGTGTTGACCGCCAGTTCTTCTGTGGATA
GGTGGGAACTGGGCCAACAGGGAGGAGAAGCAGGGCTTCCTAAAGGACTG
CAGAAGGCTGGAGGGAAGCATGCTCTTATGGGTGACTAAGAGACTAGAAC
CTCTACAGATGGATTTTTTGCCATTGCCCACACCTGCCTAGATTTAAGGT
AAAGGGGGAGTTATCACCCCCCCCTTTTGCAAAAACTCTGGATGATGAGG
TGCTGGCTGTACCCATTCCAGTCTTGTGCACAGACCCCTCCTCATCATCT
GCCCTCTGTTATTCTTACCCAGCTTGCATGTCTCGTCTCCCAAACTTACT
ACTCTACCATGCCCCTCTGTACTCCTTGTCTTCTTCATGTTTCTCCTGAA
TTGTTATAGACATTTTTATCTTTCTTTCATACTTCTATATTTTCCTTCCT
TTTCTCTTCACTGTATATTCATTTCTCTACTCATCTTTTTTACCTCACTT
CCCCTTTTTCTTTTCTCTTTCTATCCCCCTCTCTTGTTCCTTTTTTTCGC
CTTCCCTTCACCCTT
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCATGTCATGGTGTGCTCTGAT
TTATTGCCTAAGAGTTGTTCCTCCCTGAAACCATGTGCATCATGCCTACG
ACGCCTCAACACCCTCAGACCTTGGGACTGAGATTGCCAGAAAAATCAAA
TAGGAATCAATTATATCTAGGTAACCCCACCAGATGCTGAACCGTGATGT
GCATGAACGCATGAGGCCACCAATCCTGGAGCCTCACACCAAAGTGAGCC
AGGCCATAGTCAAGCAGACTGTAGTGTTCTTCCATGACAGAGAAACTTCA
AGACGAAAGTGATTGACTANGTTCACCAACCTGCCCCCGAAAAATACAAC
AAATCAGATGTTGTTGTGCCCCCCCCCAAAAAATACAAAAAACCGGGAGG
GGGGGGGGGGGTGGTTCTGAGCTGTGAATTACCTCTCATGTCGGCCATTG
ATCTCTCTTTAGCCACTGGGAAAACTGGCCACCATGACATCCTAGCCACG
GCTAGAAAATGTTAAGAGTCGTTTTATCTGTCCCCATATTACTCCCTTTT
CGGAAGAAACTTTTTACTGAAGGAATTAACCCCCCTTGCCATATCCTGCC
CCCTATTTTTCATGGAACCTACCCAATTGGCTTTGTGGAACCATTCTCCA
AAATAGCCTCGCCCGCTTTAAATACCTCTTCCTAAACGGTCCGGTTTTTG
CTCACCCCTCTTCAGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_m14.b1 MSMg01no311_m14.b1 CHROMAT_FILE:
MSMg01no311_m14.b1 PHD_FILE: MSMg01no311_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:44 2005
         (124 letters)



>mm_chr17_30363234_30363757
          Length = 524

 Score =  240 bits (124), Expect = 2e-68
 Identities = 124/124 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcatccaacatggatgggaccactgtgttgaccgccagttcttctgtggataggtggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcatccaacatggatgggaccactgtgttgaccgccagttcttctgtggataggtggga 260

                                                                       
Query: 61  actgggccaacagggaggagaagcagggcttcctaaaggactgcagaaggctggagggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgggccaacagggaggagaagcagggcttcctaaaggactgcagaaggctggagggaa 320

               
Query: 121 gcat 124
           ||||
Sbjct: 321 gcat 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)