BAC Information

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BAC

Clone NameMSMg01-311O05
Chromosome17 (Build37)
Map Location 24,900,893 - 25,079,283
singlet/doubletdoublet
Overlap gene4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3
Upstream gene2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6
Downstream geneHn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311O05.T7 (MSMg01no311_o05.b1)MSMg01-311O05.TJ (MSMg01no311_o05.g1)
ACCAG434259AG434260
length750752
length of high quality
(start - end)		317 (46 - 362)291 (75 - 365)
definitionCHROMAT_FILE: MSMg01no311_o05.b1 PHD_FILE: MSMg01no311_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:51 2005CHROMAT_FILE: MSMg01no311_o05.g1 PHD_FILE: MSMg01no311_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,078,970 - 25,079,283)(24,900,893 - 24,901,180)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTGTAGTCCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCT
CTGCCTCCCAAGTGCTAGGATTAAAGGCATGTGCAACCACCACCCAGCGA
TAATACAATTTTGATAGGAACATTTTGTTAATTTTTTATGAGGCAGAACT
GGGTATAATGGTTGAATTAAACTTACTAACCACATACAGCCTGTGTGTAT
TTTGTGTTTGTGCTTCTCCATAGTCCAATTGAGGGGTTGGGAAACAATGC
TGAACTTTGACCCTTTTTTATAGCTTCTCTTTAGTAAAGTTCACTTCTCC
CTTCCTTGATCTATTATTGTTCACCACCCCCCACCCTGAACAGAATTAAT
TGGGAATATGCTGTACCCCCCCCCCCGCGCACAGAAAACGGAGTTTATTC
TTTAGGACAAGTACTAGGAGAAAACCTGCTCCAGTTTGACTTCAGAATGC
CTCAGTGACCCAGTAACAAGCCTGTGGTAACTAGTGGCCTGGCCACCTAT
TCAGCTGTGTTAGATCGAAGTCCCATTGAAAAAATACACTTTTCAATGGT
CATCAAGCAAACTCCATATCTAGATTTAAACTACCTGCCGCGATGGTTTG
ACCACGCCCGGTCCCATAGTGTCCCTATTCACTTGCTCTTTTCTCCTCTC
CCACCCTTTTTCTTTTTTCTCATCCTTTTCTCATTCCCTTATACTTTTTT


ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGACCTCTGGAAGAGCAGCTAGTGC
TTTTAACCACTGAGCCATCTCTCCAGCCCTTGTCATTCCATCTTGGCCAA
AAATGGAAAGGAATGTGAGAGAGATAAATTACTATGTATGGGGTGTCTGT
GTGCACACACACGCATTCTCATGTGCATGTGAGTGTGTGTGCGCATGCGT
GTGTAGGGACAGGCATAGAGGCAGTCACCTATGAGATATGTATGCAGGAA
GATCAAGAGTTCAAAGACATTCTCAGCTACATAAATAGTTTGAGGCTAGC
ATGGCTCCTTGATATTTTTCTCAACAGACGAACAAACAAATCCCAAAACA
AGACAAGAACAGAACCCACCCCCCCTTAGCACAGGATTTTCTTCTCAGGC
TTGAGGCAAGGGCCCTTCCCACTGAAGCCCAGTCTTTGGGACTTGTCTCA
GATGCAAACTGTGTTCTGGTTCATTTTGGGTCCCAGTCTGCAGTATCTGT
GGTGTCATGCTGCTAGTTTAACCAATAGGGCGCTACAGCACCCCCAAGAA
TGTTGTCGTAATTCTAATGCACCCCCCCTTCTGAAACTGCCCGCTCTCCT
TCTTTAGTGAACTCATTACGATATCCATCTGCTATCTTGTCCTGGCATAA
AACGCTTGATTTATAACTCTCGTTGTACTTCATTATCGCTCGTTTCTGCC
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_o05.b1 MSMg01no311_o05.b1 CHROMAT_FILE:
MSMg01no311_o05.b1 PHD_FILE: MSMg01no311_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:51 2005
         (317 letters)



>mm_chr17_25078667_25079383
          Length = 717

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactctgtagtccaggctggcctcgaactcagaaatccgcctgcctctgcctcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ggaattcactctgtagtccaggctggcctcgaactcagaaatccgcctgcctctgcctcc 558

                                                                       
Query: 64  caagtgctaggattaaaggcatgtgcaaccaccacccagcgataatacaattttgatagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 caagtgctaggattaaaggcatgtgcaaccaccacccagcgataatacaattttgatagg 498

                                                                       
Query: 124 aacattttgttaattttttatgaggcagaactgggtataatggttgaattaaacttacta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aacattttgttaattttttatgaggcagaactgggtataatggttgaattaaacttacta 438

                                                                       
Query: 184 accacatacagcctgtgtgtattttgtgtttgtgcttctccatagtccaattgaggggtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 accacatacagcctgtgtgtattttgtgtttgtgcttctccatagtccaattgaggggtt 378

                                                                       
Query: 244 gggaaacaatgctgaactttgacccttttttatagcttctctttagtaaagttcacttct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gggaaacaatgctgaactttgacccttttttatagcttctctttagtaaagttcacttct 318

                         
Query: 304 cccttccttgatct 317
           ||||||||||||||
Sbjct: 317 cccttccttgatct 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no311_o05.g1 MSMg01no311_o05.g1 CHROMAT_FILE:
MSMg01no311_o05.g1 PHD_FILE: MSMg01no311_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:51 2005
         (291 letters)



>mm_chr17_24900693_24901383
          Length = 691

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggacctctggaagagcagctagtgcttttaaccactgagccatctctccagcccttgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggacctctggaagagcagctagtgcttttaaccactgagccatctctccagcccttgtc 260

                                                                       
Query: 61  attccatcttggccaaaaatggaaaggaatgtgagagagataaattactatgtatggggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attccatcttggccaaaaatggaaaggaatgtgagagagataaattactatgtatggggt 320

                                                                       
Query: 121 gtctgtgtgcacacacacgcattctcatgtgcatgtgagtgtgtgtgcgcatgcgtgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctgtgtgcacacacacgcattctcatgtgcatgtgagtgtgtgtgcgcatgcgtgtgt 380

                                                                       
Query: 181 agggacaggcatagaggcagtcacctatgagatatgtatgcaggaagatcaagagttcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggacaggcatagaggcagtcacctatgagatatgtatgcaggaagatcaagagttcaa 440

                                                           
Query: 241 agacattctcagctacataaatagtttgaggctagcatggctccttga 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agacattctcagctacataaatagtttgaggctagcatggctccttga 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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