BAC Information

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BAC

Clone NameMSMg01-312M18
Chromosome17 (Build37)
Map Location 29,160,172 - 29,318,996
singlet/doubletdoublet
Overlap geneSfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5
Upstream geneAnks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38
Downstream genePpil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1, LOC100042885, LOC100042888, Zfand3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312M18.T7 (MSMg01no312_m18.b1)MSMg01-312M18.TJ (MSMg01no312_m18.g1)
ACCAG434913AG434914
length776753
length of high quality
(start - end)
279 (34 - 312)288 (70 - 357)
definitionCHROMAT_FILE: MSMg01no312_m18.b1 PHD_FILE: MSMg01no312_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:57 2005CHROMAT_FILE: MSMg01no312_m18.g1 PHD_FILE: MSMg01no312_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,318,727 - 29,318,996)(29,160,172 - 29,160,456)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTT
AGACTCCCGCCTACTGCTCAGACTGTCCCCAAGCCAGTGGGGAGGAGGAC
AGGCCCCATCACAGATCCGGGTCTCAGAGACACCTCCTGTCACATTAGAT
CTATGAAGGACTAGGAGGAGCTTCCGGTGTGGCTGTACCTCATAGCTGAG
AGGCTGAGGCCCAGAGATGACTGGGGACCATCCTGCATCATGCTACCAGC
CACGGTAGAGTTAGACACAGGAGTCCGACCCAAGCTGGCTCTAAAATCTT
TCCTGATGGCCATATCTCAGTGTGTCAGGGCAGCTGTGAGGTGAATCTGG
GGGTAGGGTGGCGCAGCTCAGACAAGTCTTGTTTACAGCTGATGTGTTTG
GTGAATTCCCCCCTTTTATCTTCTATAGCCTTAACGCATTTCTAGGACCT
TTTGCATTATCCTCTCTTGTCTTTGATTTTATACTCACACGCCACAGTGT
TCGCCCAATTGACCTCCGCCCTTCTCTTGTTTTGCTACTTCTCGTGTTCT
TTTTTTTCCCGCGCCTTCATTGTGTTTTTTTATTTTATCACTTCCTTCCG
TGCCTTTCTCCATTTCCTATTCTTTCTCCTCCCTTCTTTCTTTCTCTTTT
CCTTATTGTTTTACCGTTTTTCTTCGTTCTATTCACTTTTCTCCTTTTTC
TGTCATCTTTCTTTATATTTTACCACACCCCTCGCGCCCCCCACCTTCTT
TTTTCCTCCTTGTTTTCACCCTATTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTATGTAAACCAGAGATCCACCGGCTTCAC
CCTTGCTGTGCTGGGATTACTGGTGTGTGCCACTTCAGTCAGCTTTAGTC
TTCTACACACCGTAAAAAGACAGGAATTGAGAGTTGGTAACATTTATGTG
TAGGTGGGTGCTTGAGTGTGTGGCCATATGTACACAGGAGGCCAGAGAAC
ACTGGGTGCCCTGTCCTATAGTTCTCTACCTTATTCTCTTGAGTCAAGGC
CTCTCACCGAACCCATATCTGCCAGGCTTGCAAACCAGGAGGCTCCTGAT
GTGTTTTCTAGNTTGACCCNACANCCCCCTTTTACATGAGAGGTAGGGAA
ATGACCTCAAGTCTCTGTGAAAAAGAAAAAAGTGGTGTCCTTACCCACTG
CACCATCTTCCCCGCCCTGTTACCCACCCCTAATTAAAGAGATTAGACAA
CCCACCACCACTGGAGCTGCAGTTGCTGGTGGCTGTGAGCAGCCAGATGT
GGGTGCTGTGAACAAAACTTGGGTCCTCTGCAAAAGCAGCAAGCGCTCTT
AACAGCTGAGCCATCCCTCTGGGCCCTTCATTCTTTCTCTCTCGATTAAG
AAAATTACATTTACGGCATGTGTTTGTGCGTGGGTGCGTGTGTCCCAGGA
CCCATTGTGGGATTTGGCTGGCTTTCTCCTTCAACCATATGGCGCACGGG
GTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_m18.b1 MSMg01no312_m18.b1 CHROMAT_FILE:
MSMg01no312_m18.b1 PHD_FILE: MSMg01no312_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:57 2005
         (279 letters)



>mm_chr17_29318518_29319196
          Length = 679

 Score =  468 bits (242), Expect = e-136
 Identities = 263/270 (97%)
 Strand = Plus / Minus

                                                                       
Query: 10  gaattcttagactcccgcctactgctcagactgtccccaagccagtggggaggaggacag 69
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gaattcttagactcaagcctactgctcagactgtccccaagccagtggggaggaggacag 420

                                                                       
Query: 70  gccccatcacagatccgggtctcagagacacctcctgtcacattagatctatgaaggact 129
           ||||||| ||||||  ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 419 gccccattacagataagggtctcagagacacctcctgacacattagatctatgaaggact 360

                                                                       
Query: 130 aggaggagcttccggtgtggctgtacctcatagctgagaggctgaggcccagagatgact 189
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aggaggagcttccggtgtggttgtacctcatagctgagaggctgaggcccagagatgact 300

                                                                       
Query: 190 ggggaccatcctgcatcatgctaccagccacggtagagttagacacaggagtccgaccca 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ggggaccatcctgcatcatgctaccagccacggtagagttagacacaggagtccgaccca 240

                                         
Query: 250 agctggctctaaaatctttcctgatggcca 279
           ||||||||||||||||||||||||||||||
Sbjct: 239 agctggctctaaaatctttcctgatggcca 210


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no312_m18.g1 MSMg01no312_m18.g1 CHROMAT_FILE:
MSMg01no312_m18.g1 PHD_FILE: MSMg01no312_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:57 2005
         (288 letters)



>mm_chr17_29159972_29160659
          Length = 688

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatgtaaaccagagatccaccggcttcacccttgctgtgctgggattactggtgtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatgtaaaccagagatccaccggcttcacccttgctgtgctgggattactggtgtgtg 260

                                                                       
Query: 61  ccacttcagtcagctttagtcttctacacaccgtaaaaagacaggaattgagagttggta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 ccacttcagtcagctttagtcttctacacaccgtaaaaagacaggaattgtgagttggta 320

                                                                       
Query: 121 acatttatgtgtaggtgggtgcttgagtgtgtggccatatgtacacaggaggccagagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatttatgtgtaggtgggtgcttgagtgtgtggccatatgtacacaggaggccagagaa 380

                                                                       
Query: 181 cactgggtgccctgtcctatagttctctaccttattctcttgagtcaaggcctctcaccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactgggtgccctgtcctatagttctctaccttattctcttgagtcaaggcctctcaccg 440

                                                        
Query: 241 aacccatatctgccaggcttgcaaaccaggaggctcctgatgtgt 285
           |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacccagagctgccaggcttgcaaaccaggaggctcctgatgtgt 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)