Query= MSMg01no313_i01.b1 MSMg01no313_i01.b1 CHROMAT_FILE:
MSMg01no313_i01.b1 PHD_FILE: MSMg01no313_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:16 2005
(418 letters)
>mm_chr17_45071384_45072199
Length = 816
Score = 717 bits (371), Expect = 0.0
Identities = 394/403 (97%), Gaps = 4/403 (0%)
Strand = Plus / Plus
Query: 16 gaattctttc-agcccatcttccatctgtttgtatggaatgaccaaagcggcaagagaaa 74
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattctttcaagcccatcttccatctgtttgtatggaatgaccaaagcggcaagagaaa 275
Query: 75 gagcctgaggttgatgtccgccataagttgtcccatcccttttctcctgccccccccccc 134
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gagcctgaggttgatgtctgtcataagttgtcccatcccttttctcctgcccccccccc- 334
Query: 135 ttttttttttaaataattggttaagtgtgctctgttttatctttgaggattttgttttca 194
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 335 --ttttttttaaataattggttaagtgtgctcttttttatctttgaggattttgttttca 392
Query: 195 tttttctcttgtggactgttaatagttgttcaggatagtgccttcgagtaagaaaactgt 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tttttctcttgtggactgttaatagttgttcaggatagtgccttcgagtaagaaaactgt 452
Query: 255 atttcaacatggcaggtagaaaagaattggattcttccttcactatataacccatcagcc 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 atttcaacatggcaggtagaaaagaattggattcttccttcactatataacccatcagcc 512
Query: 315 agatcactgttggaaattggcatgtttctgcttctcatgatagcaggttaatttgagcac 374
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 513 agatcactgttggaaattggcatgtttctgcttctcatgatagcaggttaaggtgagcac 572
Query: 375 catgtggctccataacagttcatccacggaatactttacagta 417
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 catgtggctccataacagttcatccacggaatactttacagta 615
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 816
Length adjustment: 9
Effective length of query: 409
Effective length of database: 807
Effective search space: 330063
Effective search space used: 330063
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no313_i01.g1 MSMg01no313_i01.g1 CHROMAT_FILE:
MSMg01no313_i01.g1 PHD_FILE: MSMg01no313_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:16 2005
(381 letters)
>mm_chr17_45239092_45239875
Length = 784
Score = 648 bits (335), Expect = 0.0
Identities = 368/381 (96%), Gaps = 5/381 (1%)
Strand = Plus / Minus
Query: 1 tcagctactgtaggctacttagtgagatccaggctagtgagaaacctatacccccccacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 580 tcagctactgtaggctacttagtgagatccaggctagtgagaaacctatacacaaccacg 521
Query: 61 cccccccacccctcacag----agagagggagagggagagaatgaacttagggtctaggt 116
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 520 -ccccccaccccccacagagaaagagagggagagggagagaatgaacttagggtctaggt 462
Query: 117 tgatttagaagtatcctgtgcctttggaggtaaagcaagggctgcagaggtcgtagcatg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tgatttagaagtatcctgtgcctttggaggtaaagcaagggctgcagaggtcgtagcatg 402
Query: 177 gctacatcattaataggaccttaagattcattctttgtccttaaatagctgctttcagaa 236
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gcaacatcattaataggaccttaagattcattctttgtccttaaatagctgctttcagaa 342
Query: 237 tctgctgtgatcatgcaacagacagtatttctcagtgaatagcctaacatgaacatctga 296
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 341 tctgctgtgatcatgcaacagacagtatttctcagtgaatatcctaacatgaacatctga 282
Query: 297 tgaacttagtgctcacagaacagcttctcccctgtcaactaatgattccttctgtgtaat 356
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 281 tgaacttagtgctcacagaacagcttctccccagacaactaatgattccttctgtgtaat 222
Query: 357 gtttctcacctgaagctgtct 377
|||||||||||||||||||||
Sbjct: 221 gtttctcacctgaagctgtct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 784
Length adjustment: 9
Effective length of query: 372
Effective length of database: 775
Effective search space: 288300
Effective search space used: 288300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
