Query= MSMg01no313_k02.b1 MSMg01no313_k02.b1 CHROMAT_FILE:
MSMg01no313_k02.b1 PHD_FILE: MSMg01no313_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:33 2005
(771 letters)
>mm_chr17_51182574_51183747
Length = 1174
Score = 1415 bits (732), Expect = 0.0
Identities = 763/774 (98%), Gaps = 3/774 (0%)
Strand = Plus / Plus
Query: 1 aagatactatccccaacatggtagaaaaaaaagtgatagaaaataatgggttgagtttaa 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 aagatactatccccaacatggtagaaaaaaaagtgagagaaaataatgggttgagtttaa 260
Query: 61 cttagcccatttctcacactagattaaactagaacaatgattgaatacaaaatttggaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttagcccatttctcacactagattaaactagaacaatgattgaatacaaaatttggaga 320
Query: 121 catatatgtaaagaatgtaaaaatgccaattatgccagagcattagttacaaataaacca 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catatatataaagaatgtaaaaatgccaattatgccagagcattagttacaaataaacca 380
Query: 181 atagctgtggattcctatacttccattaattataggagagcttaatttattactcaatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagctgtggattcctatacttccattaattataggagagcttaatttattactcaatat 440
Query: 241 atatat--ccccagctcttggacaccatattaacaaacctgttttacagctgccacactc 298
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 atatatatccccagctcttggacaccatattaacaaagctgttttacagctgccacactc 500
Query: 299 atatgatgatagcctagcccctacatcatataggtaggagacaacggtaatcaagttata 358
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 atatgatgatagcctagcccctacatcagataggtaggagacaacggtaatcaagttata 560
Query: 359 attgtgtcaccaaggcaagcagtaatccaaacaattgtttgtttgcctgttttgttttaa 418
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 attgtgtcaccaaggcaagcagtaatccaaacaattgtttgtttgtctgttttgttttaa 620
Query: 419 tcaaatagagaaatgtatacttatacacagtgagaaatcagtcttcagagggactacaag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaaatagagaaatgtatacttatacacagtgagaaatcagtcttcagagggactacaag 680
Query: 479 agagtctccttctcagttgtcagaagaaatcacatcctgcaacaccttcagctcagaata 538
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agagtcttcttctcagttgtcagaagaaatcacatcctgcaacaccttcagctcagaata 740
Query: 539 ggatttgaaactattttccatgtttgtaatattgtgttatagctcagctttacta-ttta 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 741 ggatttgaaactattttccatgtttgtaatattgtgttatagctcagctttactacttta 800
Query: 598 acttcctcattttaccttttaagaagttaaatgacaagccaggcacactgaggaagctgg 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acttcctcattttaccttttaagaagttaaatgacaagccaggcacactgaggaagctgg 860
Query: 658 tgagacagaacaattctgaggtgaagccagatcaagctgagctatgttacatagtgagaa 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tgagacagaacaattctgaggtgaagccagatcaagctgagctatgttacatagtgagaa 920
Query: 718 ctaatttgcaacacattgcctcaaggtgagaaaaaacaaaataaacagtagttg 771
|||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 921 ctaatttgcaacacattgcctcaaggtgagaaaacccaaaataaacagtagttg 974
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 771
Length of database: 1174
Length adjustment: 10
Effective length of query: 761
Effective length of database: 1164
Effective search space: 885804
Effective search space used: 885804
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no313_k02.g1 MSMg01no313_k02.g1 CHROMAT_FILE:
MSMg01no313_k02.g1 PHD_FILE: MSMg01no313_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:33 2005
(637 letters)
>mm_chr17_51339535_51340571
Length = 1037
Score = 996 bits (515), Expect = 0.0
Identities = 555/573 (96%), Gaps = 9/573 (1%)
Strand = Plus / Minus
Query: 7 aacaaaaaaaaaaactagttgagtttttgatcaaagatataatcagagacagatttgatt 66
||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 573 aacaacaacaaaaactagttgagtttttgatcaaagatataatcagagacagatctgatt 514
Query: 67 ttttgctaggtcaggaaagattgccagctaaggcatgtgcaaacttcatgctttataaga 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ttttgctaggtcaggaaagattgccagctaaggcatgtgcaaacttcatgctttataaga 454
Query: 127 aacatgaagttgtcaaggcatgaggcatgtgcctttactcccagaacctggtaggcagag 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aacatgaagttgtcaaggcatgaggcatgtgcctttactcccagaacctggtaggcagag 394
Query: 187 tcaggcatgtctctggaggcctaatgtctgcctggtataagcagtaaagtccaggatagt 246
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 393 tcaggcatgtctctggaggcctaaggtctgcctggtataagcagtaaagtccaggatagt 334
Query: 247 agggtttacatattgatattgtttcaaaagacaaaacaaaactgagcaaacaaaaataat 306
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 333 agggtttacatattgagactgtttcaaaagacaaaacaaaactgagcaaacaaaaatcat 274
Query: 307 ggatctgaatgttaaacaaagcacaggagttttaaagaaatggcctaattt--------t 358
|||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 273 ggatctgaatgttaaacaaaacacaggagttttaaagaaatggcctaattttttgtttgt 214
Query: 359 ttgtttgtttgtttgtttttcttttattgggtattttctttattcacatttcaaatgtta 418
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 213 ttgtttgtttgtttgtttttcttttattgagtattttctttattcacatttcaaatgtta 154
Query: 419 tcccctttccagttctctactctggaa-ccccctatcccatttcccattcccctgcctct 477
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 153 tcccctttccagttctctactctggaacccccctatcccatttcccattcccctgcctct 94
Query: 478 atgagggtgctcccctgcccacccactcccccactcactctgtttgtatgactttgaagc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 atgagggtgctcccctgcccacccactcccccactcactctgtttgtatgactttgaagc 34
Query: 538 ctattaggtagcctgtttgagtcaatgtcctcc 570
|||||||||||||||||||||||||||||||||
Sbjct: 33 ctattaggtagcctgtttgagtcaatgtcctcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
