BAC Information

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BAC

Clone NameMSMg01-315A19
Chromosome17 (Build37)
Map Location 39,984,942 - 39,985,283
singlet/doubletsinglet
Overlap geneLOC672857
Upstream geneLOC100043297, LOC100043300, EG668200, LOC627695
Downstream geneLOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315A19.T7 (MSMg01no315_a19.b1)MSMg01-315A19.TJ (MSMg01no315_a19.g1)
ACCAG435802AG435803
length734729
length of high quality
(start - end)		370 (47 - 416)637 (77 - 713)
definitionCHROMAT_FILE: MSMg01no315_a19.b1 PHD_FILE: MSMg01no315_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:24 2005CHROMAT_FILE: MSMg01no315_a19.g1 PHD_FILE: MSMg01no315_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:25 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AATTATTACTGCTGTCGCTATACGACTCACTATATTTCAGAAATCCGCGG
AATTCCCAGTAAGTTCCGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCC
TTTGTACCACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGGCCC
TCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCTGGCGGAGCGCTGAGA
AGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAACAAGGTTT
CCGTAGGTGAACCTGCGGAAGGATCATTAACGAGAGACTGTGGAGGAGCG
GCGGCGTGGCCCGCTCTCCCCGTCTTGTGTGTGTCCTCGCCGGGAGGCGC
GTGCGTCCCGGGTCCCGTCGCCCGCGTGTGGAGCGAGGTGTCTGGAGTGA
GGTGAGAGAAGGGGTGCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNTCN
CNNNNNCCCCCCCCCCCCCNCCCCCCCCCCCCCNCCCCCCCNNNNNCCCC
CNCCTCCCCCCCCCCCNCCCNCCCCCTCCCNCCCCCCCCCCTCCCCCCTC
NNCCCCCTCTTTCCCCCCCCTTCTTCCCCCTTCTTTTTCTTTTTCCTCTT
TCCTTCTCCCCCCCTTTTCTCTTCTCTTTTCCCTTTCCCTTCTTCCTCTC
CCTTTTTTTTTTTTTTTTCCCCCTCTCCCCTCCCTTCCTCTCTTCTTTTT
CCCTTTTCTCCTTCTTTTTTTTCCTTTCTTTTTT

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGGGAAATCATCACTCAGGGAC
TTCAGGCAGAAAACTAGCCAGTCAGCCTCTGGATAGACAAGGCTCAACAG
TTCAGAGAACCAGGCCATCGCAAATAGTTCACAGACCTGCAAGGAAGACA
TGCAGATCCCTGCCCCCCACCCTACCCCTCCCCCAGCCCCACCCAAACAT
AGGGAGAAAAGGCAGTGTGGGGGAGGGGGAGGTGCTGTGAGAGAATTTAG
ATAGCTCGAAGAAATAAATAGCTGGAGACTTCATTCATTTACTTATTTTA
TTGAGTATATGGTGAAAGAGGGAAAATGGCTCGAAAAGGAGGGAGGGCAG
ACTGTCTTCCCATGCTGGGACCATTCATGCCTTAAGAAGGAATGCAGGAG
GGTGGAGAGATGGCTCATCGGTTTAGAGCCCTGACTGCTCTTCTGAAGAT
CCTGAGTTCAAATCCCAGCAACCAAATGGTGGGTGGTTCACAACCACCCA
CAATGAGATCTGGTGCCCTCGTCTAGTGTGTCCTACACTGCTACAGTGTA
CTTACATATAATAAATAAATCTGAAGCAAAAGGGGGAGGAGGGGGNAGGA
GGAGGAAGGCAGCCNGTCNGNCCAAAGCGGCTCCCGTTTGAATCCCAAAG
GGCAGTCTTGGAACCCTGCACAGATAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_a19.b1 MSMg01no315_a19.b1 CHROMAT_FILE:
MSMg01no315_a19.b1 PHD_FILE: MSMg01no315_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:24 2005
         (370 letters)



>mm_chr17_39984740_39985510
          Length = 771

 Score =  551 bits (285), Expect = e-161
 Identities = 335/369 (90%), Gaps = 28/369 (7%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattcccagtaagttccggtcataagcttgcgttgattaagtccctgccctttgtac- 61
           |||||||||||||||| | || ||||||||||||||||||||||||||||||||||||| 
Sbjct: 203 ggaattcccagtaagtgcgggccataagcttgcgttgattaagtccctgccctttgtaca 262

                                                                       
Query: 62  caccgcccgtcgctactaccgattggatggtttagtgaggccctcggatcggccccgccg 121
           ||||||||||||||||||||||||||||||||||||||                      
Sbjct: 263 caccgcccgtcgctactaccgattggatggtttagtga---------------------- 300

                                                                       
Query: 122 gggtcggcccacggccctggcggagcgctgagaagacggtcgaacttgactatctagagg 181
                ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 301 -----ggcccacggccctggtggagcgctgagaagacggtcgaacttgactatctagagg 355

                                                                       
Query: 182 aagtaaaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcattaacgagaga 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 356 aagtaaaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcattaacgggaga 415

                                                                       
Query: 242 ctgtggaggagcggcggcgtggcccgctctccccgtcttgtgtgtgtcctcgccgggagg 301
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 416 ctgtggaggagcggcggcgtggctcgctctccccgtcttgtgtgtgtcctcgccgggagg 475

                                                                       
Query: 302 cgcgtgcgtcccgggtcccgtcgcccgcgtgtggagcgaggtgtctggagtgaggtgaga 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 cgcgtgcgtcccgggtcccgtcgcccgcgtgtggagcgaggtgtctggagtgaggtgaga 535

                    
Query: 362 gaaggggtg 370
           |||||||||
Sbjct: 536 gaaggggtg 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 771
Length adjustment: 9
Effective length of query: 361
Effective length of database: 762
Effective search space:   275082
Effective search space used:   275082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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