BAC Information

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BAC

Clone NameMSMg01-315B10
Chromosome17 (Build37)
Map Location 14,849,699 - 14,850,045
singlet/doubletsinglet
Overlap genenone
Upstream geneTcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik, Dact2, Smoc2, LOC664856, Thbs2, LOC100041236
Downstream geneWdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315B10.T7 (MSMg01no315_b10.b1)MSMg01-315B10.TJ (MSMg01no315_b10.g1)
ACCAG435829AG435830
length709691
length of high quality
(start - end)
347 (71 - 417)248 (56 - 303)
definitionCHROMAT_FILE: MSMg01no315_b10.b1 PHD_FILE: MSMg01no315_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:28 2005CHROMAT_FILE: MSMg01no315_b10.g1 PHD_FILE: MSMg01no315_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGAGCCGC
GGAATTCCTGAAGATTCCAGAGAAAACAGATACCAGATCACCTGGAGCTT
CCACTGGGAGAGAAAGGAGCAAGGGGAACTCCTCTGAGGATACAAGAGAA
GTCACTTGGATACCCAGAGCTTCCTGTATCCCCAGAAAGCCGTCTTTCAC
AGTAAATAAGTGTCTGACTTCCTCTAGGTCCTAGCATTTATGAGGCAATA
AGAGTCTTAGTAGATCTGAGTTCAAATACCCTGTACCCACATAAAAAGCC
AGACATGGCACCGAATACCTACAGTCCAAGGGTTTAGTTAGGAGAACAGA
GACAGGATAATCCAGGGGATGACTGATCAGCTGGCTTAGTAAAATGAAGG
AACTCAGGTTCAGGGAGTACCCCCCCCCTCAAAAACTAAATTGAGAACAT
TACTAAGGTCAGATTTGGAGGCAGCTGAAAGTCGACCATTTGACTCCTTC
ACGGATCTGGCCTTTGAGGAAATTGGCGGCCACAATTCAACACTGTAGAT
AGTACAACAACCGGTTATGCCTATGAAAGAGAAAGTACATGCGGAGAGGG
AGAAACGGCTGTGCTTATTCTTTTAATAGCAACCTACCCTCATGGTCGCA
GATTGGCGTCCCACAGAACTGTGCTAATTCTAATAACAGTACCCCAAATT
GAAGTGAGC
GGAGGCCGCCTGGTTCCCGAATTTAGGTGACCTATAGAAGTTCCCGCAAA
AGTCAGTAATTATTCAGTCCATGAGGCTGGATGTCTCAGCCGGTCTTCTC
CCCGTGTTGGAATCCTGAAGAAGTAGGCTCTAATACCAGCGAAAGAATGC
TTCAGCAGCAGGAGAGATGAAGTCGCAGCAACAGTAAGGGGCGAAAGGGC
AAAGCTTCCTTCTTTCATGTCCTTGTATGTGGGCTGCCAACAGGTGTGAC
CTAAATTTAGGGCGGATCTTCTTACCTCAAATGATTCAATCAAGAAAACT
TGCTTCAGGTGTGCCCATCTGCTTGGGTTTTAGTTGATTCCATATTTTTT
CAAGATGACCACCACAGTACGTCATGATGTTGGTATTGATGCCCTATACC
CCCCCCCTGCAACAAAAGAGGAGCGAGATTGTAGTTGCACTGGGTGCATC
CCTCCTGGCGCACTGCCAGGATGGCTCACACATACCTTCTGTGATGACCT
CTTCACACAGCACGACGCTAGAGATCTGATCACAGGGTTACCACACGGTG
GTCTTGACCCTGGCCACCTTATGGTGTTCTCAAAGTATCTTCCCTGCCTG
CCGTCCTGGAGCTCCCCGCGGCCGCTCATACTGTTCCCGATCTATAGTCT
GACGTCAGGGAAGCGTACCCTTGTCTCATCATGAATGCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_b10.b1 MSMg01no315_b10.b1 CHROMAT_FILE:
MSMg01no315_b10.b1 PHD_FILE: MSMg01no315_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:28 2005
         (347 letters)



>mm_chr17_14849499_14850245
          Length = 747

 Score =  656 bits (339), Expect = 0.0
 Identities = 345/347 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaaacagataccagatcacctggagcttccactgggagagaaaggagcaaggggaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaaacagataccagatcacctggagcttccactgggagagaaaggagcaaggggaact 260

                                                                       
Query: 61  cctctgaggatacaagagaagtcacttggatacccagagcttcctgtatccccagaaagc 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 cctctgaggatacaagagaagtcacctggatacccagagcttcctgtatccccagaaagc 320

                                                                       
Query: 121 cgtctttcacagtaaataagtgtctgacttcctctaggtcctagcatttatgaggcaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtctttcacagtaaataagtgtctgacttcctctaggtcctagcatttatgaggcaata 380

                                                                       
Query: 181 agagtcttagtagatctgagttcaaataccctgtacccacataaaaagccagacatggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagtcttagtagatctgagttcaaataccctgtacccacataaaaagccagacatggca 440

                                                                       
Query: 241 ccgaatacctacagtccaagggtttagttaggagaacagagacaggataatccaggggat 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccgaatacctacagcccaagggtttagttaggagaacagagacaggataatccaggggat 500

                                                          
Query: 301 gactgatcagctggcttagtaaaatgaaggaactcaggttcagggag 347
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gactgatcagctggcttagtaaaatgaaggaactcaggttcagggag 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)