XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTAGTG
AATCTACCTGGCTCTGAAAGTTCTTTTTCAGTTGCAAGTTCCATTTTTTC
AGTGACCACATGGCTCTTTCTATTATCCACTTCACTTGATTGGCTGCTCC
TTTATGTCCTTTTAGAAACTGTACCATTTCTTTGAAGTTGTTGAGTTCCT
GGGTATGAGAGTTTTAAAGTGTTTTCCAACTGCTCTTTTAATAACTATGG
GTTCTGTACTGTCTTCTCCTTCTGCATTGGTGATTTGCATCCCTTTTCTC
TTGATTGTATTTCATCGATTAATTTGAAGAAAACACTTTTCATTTTATTG
CTTATTTTTATGTTTTACTTTGTTCAATTTTTTGACTGGTTTTCTATCTT
TATGATTTAACCGCCCTGGCAGTATTTGAGTGTGCTTGCTTGCTTTTGTT
TCTAGAAGTAAAAAAGAAAAAAAATCTATATTGAATTGAGCCCTTCCTTC
CTTTTTTTTCAATATTTTATTAGATATTTTCTTCACTTACATTTCAAATG
CAGTGGGGAAAAGCCTCGAAGATATGGGTACAGGGGAAAAATTCCTGAAC
AGAACAGCAATGGCTTGTGCTGCAAGATCAAGAATCGACAAATGGGACCT
CATAAAATTGCAAAGCTTCTGTAAGGCAAAACATACTGTCAATAAGACAA
AAAGGCCACCAACAGATTGTGAAAGGATTTTTAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGTGTCTTGAGAGAAATCTGCTCTT
CCCTATCAGTAACAACTACCTGAAGATTTACAGAGGCCAAAAGTAGAATC
TGCTCTAAACACCAAAGTGAACAACAGAGCTCTCATCTAGTGCATCTGGC
CACACCAAAGCTATGGAGGACCATCGCAAGTGGGTCAGGGTAAACAACCT
CCTTGGTTCTCAGTTCCTTCTCNATTAAGGAGGNACAATAAACCCCCGTG
AACCATGGGGATTGATAAGATAATAATTTTGCAAAGCCGGNTACCAACCC
TGATGAAAAAGGNCCATTGGAATGAAAAAGCTTATCCCCAATTATTTTTG
GTTCCAAGGGAAAGGATCATGGAAGTAGCCCCCCCCCCGCAAATTCTTTC
TGGGAAGTTTTTTTCCTTTTCCCAAATGGGCCGAATGGNNAGCTTTTTAG
GTGGTCGGGGGGGGAAGGGGGGGTTTTCAACAACNCNCAGNTAGNTTTTN
NNNNNGGGGGGCCCCCCTTTTTTTTTAAAACCCCCTCACCCAAAAAAACA
ACTTTTTATTAAAAAAAAAAAAAACCTTCTTGTGGGTAAAAAATGAGAGA
GTGCCCCCCTGGGATTTATCACCTTTTTTTCCCCCACTTTATAAATAAAA
ATCTCGGGCGGCGAAAGGNNNNTNNGTGATTTTTTATTTGGCGCGGGAGG
CCCCGCNGNCCCCTCTCTACAG

Query= MSMg01no315_f23.b1 MSMg01no315_f23.b1 CHROMAT_FILE:
MSMg01no315_f23.b1 PHD_FILE: MSMg01no315_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:48 2005
         (657 letters)



>mm_chr17_3771393_3772453
          Length = 1061

 Score = 1104 bits (571), Expect = 0.0
 Identities = 637/667 (95%), Gaps = 17/667 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctctagtgaatctacc----tggctctgaaagttctttttcagttgcaagttcca 59
           |||||||||||||||    ||    |||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctctagtgaa----ccaatgtggctctgaaagttctttttcagttgcaagttcca 259

                                                                       
Query: 60  ttttttcagtgaccacatggctctttctattatccacttcacttgattggctgctccttt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttttttcagtgaccacatggctctttctattatccacttcacttgattggctgctccttt 319

                                                                       
Query: 120 atgtccttttagaaactgtaccatttctttgaagttgttgagttcctgggtatgagagtt 179
           ||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 320 atgtctttttagaaactgtaccatttctttgaagttgtggagtccctgggtatgagagtt 379

                                                                       
Query: 180 ttaaagtgttttccaactgctcttttaataactatgggttctgtactgtcttctccttct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttaaagtgttttccaactgctcttttaataactatgggttctgtactgtcttctccttct 439

                                                                       
Query: 240 gcattggtgatttgcatcccttttctcttgattgtatttcatcgattaatttgaagaaaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcattggtgatttgcatcccttttctcttgattgtatttcatcgattaatttgaagaaaa 499

                                                                       
Query: 300 cacttttcattttattgcttatttttatgttttactttgttcaattttttgactggtttt 359
           ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 500 cacttttcactttattgcttatttttatgttttactttgttcaattttttgtctggtttt 559

                                                                       
Query: 360 ctatctttatgatttaaccgccctggcagtatttgagtgtgcttgcttgctt----ttgt 415
           |||||||||||||||||| ||  |||||||||||||||||||||||||||||    ||||
Sbjct: 560 ctatctttatgatttaactgctttggcagtatttgagtgtgcttgcttgcttgcttttgt 619

                                                                       
Query: 416 ttctagaagtaaaaaagaaaaaaaatctatattgaattgagcccttccttcctttttttt 475
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 620 ttctagaagtaaaaaagaaaaaaaatctatattgaattgagcccttccctcctttttttt 679

                                                                       
Query: 476 --caatattttattagatattttcttcacttacatttcaaatgcagtggggaaaagcctc 533
             |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 680 tccaattttttattagatattttcttcacttacatttcaaatgaagtggggaaaagcctc 739

                                                                       
Query: 534 gaagatatgggtacaggggaaaaattcctgaacagaacagcaatggcttgtgctgcaaga 593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 740 aaagatatgggtacaggggaaaaattcctgaacagaacagcaatggcttgtgctacaaga 799

                                                                       
Query: 594 tcaagaatcgacaaatgggacctcataaaattgcaaagcttctgtaaggcaaaa---cat 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||
Sbjct: 800 tcaagaatcgacaaatgggacctcataaaattgcaaagcttctgtaaggcaaaaaaacat 859

                  
Query: 651 actgtca 657
           |||||||
Sbjct: 860 actgtca 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1061
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1051
Effective search space:   679997
Effective search space used:   679997
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no315_f23.g1 MSMg01no315_f23.g1 CHROMAT_FILE:
MSMg01no315_f23.g1 PHD_FILE: MSMg01no315_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:49 2005
         (195 letters)



>mm_chr17_3931829_3932423
          Length = 595

 Score =  369 bits (191), Expect = e-107
 Identities = 194/195 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtgtcttgagagaaatctgctcttccctatcagtaacaactacctgaagatttacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tctgtgtcttgagagaaatctgctcttccctatcagtaacaactacctgaagatttacag 336

                                                                       
Query: 61  aggccaaaagtagaatctgctctaaacaccaaagtgaacaacagagctctcatctagtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aggccaaaagtagaatctgctctaaacaccaaagtgaacaacagagctctcatctagtgc 276

                                                                       
Query: 121 atctggccacaccaaagctatggaggaccatcgcaagtgggtcagggtaaacaacctcct 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 atctggccacaccagagctatggaggaccatcgcaagtgggtcagggtaaacaacctcct 216

                          
Query: 181 tggttctcagttcct 195
           |||||||||||||||
Sbjct: 215 tggttctcagttcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)