BAC Information

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BAC

Clone NameMSMg01-315I07
Chromosome17 (Build37)
Map Location 65,946,651 - 65,946,989
singlet/doubletsinglet
Overlap geneVapa
Upstream geneMan2a1, 4930583I09Rik, LOC100043871, E130009J12Rik, LOC668655, LOC674701
Downstream geneTxndc2, Rab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599, LOC100043875, 1110012J17Rik, LOC100043876, Rab12, 9130404H23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315I07.T7 (MSMg01no315_i07.b1)MSMg01-315I07.TJ (MSMg01no315_i07.g1)
ACCAG436139AG436140
length707707
length of high quality
(start - end)
366 (53 - 418)340 (75 - 414)
definitionCHROMAT_FILE: MSMg01no315_i07.b1 PHD_FILE: MSMg01no315_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:00 2005CHROMAT_FILE: MSMg01no315_i07.g1 PHD_FILE: MSMg01no315_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATGGGGTTATT
TGAATTTCTGGAGTCCAGCTTCTTGAGCTCTTTGTATATATTGAATATTA
GTCTCCTATCAGATTTAGGATTGGTAAAAATCCTTTCCCAATTTGTTGGT
GGCCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAGGCTTTGCAA
TTTTATGAGGTCCCATTTGTCAATTCTTGATCTTACAGCACAAGCCATTG
CTGTTCTGTTTAGGAATTTTTCCCCTGTGCCCATATCTTCCAGGCTTTTC
CCCACTTTCTCCTCTATAAATTTCTTTATGTGGAGGTCTTTGATCCACTT
AGACTTGAGCTTTGTACAAGGCCCCCCCAAAGGATCAATTCGCATTCTTC
TACATGACAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCT
TTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATA
GGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGATCTACTT
GTCTGCCTCTATACCAGTACCAGCAGTTTTTATCACAATTGCTCTGTAGT
ACAGCTTATTCTCAGGCATGATGATTCCACCAGAGGTTCTTTTATTGTTG
AGAATAN
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAAAAGCTAGTAAGACTGTGATGGG
AGCTGTTATCACCCTACTAACACACACACACATTTTTCACATCTCAGGAA
AAAAGAGGTTATATAAACAAAGGTGTAAAACATAAGCTGCAAACATATCC
TTTTACATAAAAACATGAAATATTTTCCCTTGGCATTATGGCTAAACCGT
CCACCAGGAAGAGTGAGGAATACAGAATAATAAATATTCTGCAATACTAG
GGCAGTCCCACAGAATAATTATATTCCTATCCTATTAAACTCAAGCTGCT
ATAACTTGGGTCATGAATGTCCCCACTGCCCAGAGTGACTGGCTCTACTG
GGAAGCAATAAAACCCCCCACGTGGCCCCAATGAGAGGAACTGAGGTCTC
TGGCTGAGGAAAGACATACTTTTAGAGGATTGAAAGACCCAACTCTTCCA
AGCTCTTTTCTTCTTGAATATTCTATGAGGTTTTATTCTGCCACTAATTC
CAACCAAAACGTATTGTCTTGGCCACACTGTTCCCTGTCTATGTCTGCTT
TTTCAGGACAGGGTCCAGGCTTACAGGGAGGGGACAGGGGTGGTTGAGAA
GCTTCTACTCAGAATTCCTCAAATACGAGGACGGCAGGAGTTGGCTTCCT
CCCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_i07.g1 MSMg01no315_i07.g1 CHROMAT_FILE:
MSMg01no315_i07.g1 PHD_FILE: MSMg01no315_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:00 2005
         (340 letters)



>mm_chr17_65946451_65947190
          Length = 740

 Score =  640 bits (331), Expect = 0.0
 Identities = 337/339 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaaagctagtaagactgtgatgggagctgttatcaccctactaacacacacacacatt 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaaagctagtaagactgtggtgggagctgttatcaccctactaacacacacacacatt 260

                                                                       
Query: 61  tttcacatctcaggaaaaaagaggttatataaacaaaggtgtaaaacataagctgcaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcacatctcaggaaaaaagaggttatataaacaaaggtgtaaaacataagctgcaaac 320

                                                                       
Query: 121 atatccttttacataaaaacatgaaatattttcccttggcattatggctaaaccgtccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatccttttacataaaaacatgaaatattttcccttggcattatggctaaaccgtccac 380

                                                                       
Query: 181 caggaagagtgaggaatacagaataataaatattctgcaatactagggcagtcccacaga 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggaagagtgagggatacagaataataaatattctgcaatactagggcagtcccacaga 440

                                                                       
Query: 241 ataattatattcctatcctattaaactcaagctgctataacttgggtcatgaatgtcccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataattatattcctatcctattaaactcaagctgctataacttgggtcatgaatgtcccc 500

                                                  
Query: 301 actgcccagagtgactggctctactgggaagcaataaaa 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actgcccagagtgactggctctactgggaagcaataaaa 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)