Query= MSMg01no316_e03.b1 MSMg01no316_e03.b1 CHROMAT_FILE:
MSMg01no316_e03.b1 PHD_FILE: MSMg01no316_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:58 2005
(603 letters)
>mm_chr17_30695687_30696688
Length = 1002
Score = 1054 bits (545), Expect = 0.0
Identities = 585/599 (97%), Gaps = 3/599 (0%)
Strand = Plus / Plus
Query: 5 gaattctcccaaagactgaacagaggcagagctttagagatccatgcagaagtgaaagga 64
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattctcccaaagacagaacagaggcagagctttaga--tccatgcagaagtgaaagga 262
Query: 65 ttctggaaaagatgcaaaccaacgcggataagaagacgttgagctatacaaccttttcca 124
|||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 263 ttctggaaaagatggaaaccaactcggataagaaggtgttgagctatacaaccttttcca 322
Query: 125 aaagggtgagccacaacaaagagaaattacatcctctctcttagagggcagaagccaggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaagggtgagccacaacaaagagaaattacatcctctctcttagagggcagaagccaggc 382
Query: 185 actaacttgagagagacgcggaactacccaggacacccaaaatagagatcccagcttaca 244
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 383 actaacttgagagagacgcggaactacccaagacacccaaaatagagatcccagcttaca 442
Query: 245 gagcctcaatttgccttgccttagcctctggttgaggaccccaaagaagcagttgtaaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gagcctcaatttgccttgccttagcctctggttgaggaccccaaagaagcagttgtaaag 502
Query: 305 agtcagagagctgaaccctgacaagctaaagagtgaaggtggtgggaaactctagcacaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agtcagagagctgaaccctgacaagctaaagagtgaaggtggtgggaaactctagcacaa 562
Query: 365 ggaagaagtgcacaggaggagacggaaccacccccgatggcctggaacggatctcagtaa 424
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 563 ggaagaagtgcacaggacgagacggacccacccccgatggcctggaacggatctcagtaa 622
Query: 425 atgagaattaccctgaagcttgatatctctgagccaaaggctaaaggatggatcaaattc 484
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 623 atgagaattaccctgaagcttgatatctctgagccgaaggctaaaggatggatcaaattc 682
Query: 485 tgtggccacctatctttttgcttctgtggccttgagaatctgaagatcccaaacccatgg 544
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgtggccacctatctttttgctgctgtggccttgagaatctgaagatcccaaacccatgg 742
Query: 545 tggcatccctctaacaaggtgactg-ttaatatccaggaggccttgaagcatggtgggg 602
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 743 tggcatccctctaacaaggtgactggttaatatccaggaggccttgaagcatgttgggg 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1002
Length adjustment: 10
Effective length of query: 593
Effective length of database: 992
Effective search space: 588256
Effective search space used: 588256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_e03.g1 MSMg01no316_e03.g1 CHROMAT_FILE:
MSMg01no316_e03.g1 PHD_FILE: MSMg01no316_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:58 2005
(638 letters)
>mm_chr17_30790393_30791430
Length = 1038
Score = 982 bits (508), Expect = 0.0
Identities = 520/524 (99%)
Strand = Plus / Minus
Query: 115 aatttgttcttttcttacttgacgtgatgcagtgcttgtctgcatgtctgtctgtgcagc 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 aatttgttcttttcttacttgacgtgatgcagtgcttgtctgcatgtctgtctgtgcagc 979
Query: 175 cgcatgtgtctgtgaaacacccacggaagcggaagacgatgtcagagaccctggaactag 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 cgcatgtgtctgtgaaacacccacggaagcggaagacgatgtcagagaccctggaactag 919
Query: 235 agttacagatggttgctgggtgccctgaccagccaggcgagcgcagcgagtgctcctggc 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 agttacagatggttgctgggtgccctgaccagccaggcgagcgcagcgagtgctcctggc 859
Query: 295 cactgagccacctccccagcgtggctcctcacctccacaaatctgtattgattggcaatt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 cactgagccacctccccagcgtggctcctcacctccacaaatctgtattgattggcaatt 799
Query: 355 cccaaaacaccttccaaataaaagtgctcgtttctctggatggcacaccacagatgaact 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 cccaaaacaccttccaaataaaagtgctcgtttctctggatggcacaccacagatgaact 739
Query: 415 gtcaagactgagagatgaacctctgtctcgtcagctgggaactgtggtctctgagaaagc 474
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gccaagactgagagatgaacctctgtctcgtcagctgggaactgtggtctctgagaaagc 679
Query: 475 ctgattcaaagcgagtgactgctgtgtatcaagaaaccatccgacgccttagaacagaat 534
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 678 ctgattcaaagcaagtgactgctgtgtatcaagaaaccatccgacaccttagaacaaaat 619
Query: 535 ggaagagtggtctctgaagactgggaagggcatcaaaataaagctagagaggggggtatt 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ggaagagtggtctctgaagactgggaagggcatcaaaataaagctagagaggggggtatt 559
Query: 595 agttctgggttccccctgtagcacagtagggctaactattgatt 638
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agttctgggttccccctgtagcacagtagggctaactattgatt 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
