Query= MSMg01no316_o03.b1 MSMg01no316_o03.b1 CHROMAT_FILE:
MSMg01no316_o03.b1 PHD_FILE: MSMg01no316_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:45 2005
(693 letters)
>mm_chr17_52550746_52551838
Length = 1093
Score = 1131 bits (585), Expect = 0.0
Identities = 659/693 (95%), Gaps = 18/693 (2%)
Strand = Plus / Plus
Query: 5 gaattccaccagccatccctccttttgtcatttattctcaagagtcactagtgtatttgg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaccagccatccctccttttgtcatttattctcaagagtcactagtgtatttgg 264
Query: 65 tgatattctggaggtttgttgtatgtcctgtgtgttgtgatttagtgatgtgaaatcaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 265 tgatattctggaggtttgttgtatgtcctgtgtgttgtgatttagtgatgtcaaatcaat 324
Query: 125 atttgtcatttagcatagtaaaggatcaaccttgagcatctgcatggaacttttagtgcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttgtcatttagcatagtaaaggatcaaccttgagcatctgcatggaacttttagtgcc 384
Query: 185 tagtggatctaatgtctactgctgcaagagcatttagctatttctatattagtaggttaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagtggatctaatgtctactgctgcaagagcatttagctatttctatattagtaggttaa 444
Query: 245 cacattttaaatttgtgagtttcaaggataatctttggagttaatatgactcctgtcaca 304
||||||||||||||||||| | |||||||| ||||||| |||||||||||||||||||||
Sbjct: 445 cacattttaaatttgtgagatccaaggatagtctttggcgttaatatgactcctgtcaca 504
Query: 305 cacctaaactgatagtgagtgtaagaccatcg--gcccctaacaatgaaatagattatgt 362
|| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 505 catataaactgatagtgagtgtaagacca--gaagcccctaacaatgaaatagattatgt 562
Query: 363 tcttttggtttgggtctcaaaggtatataatgataagaatgtagactgctgattaaattt 422
|||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 563 tcttttggtttgggcctcagaggtatataatgataagaatgtagactgctggttaaattt 622
Query: 423 tatttggggaaggaagactactaaggtatgcttctgtctgcttggttgggatacagaagt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tatttggggaaggaagactactaaggtatgcttctgtctgcttggttgggatacag---- 678
Query: 483 aagcccagttcctaccaagactgaacttggaatgtaagcagatggtaaaagaaaatttga 542
||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 679 --------ttcctaccaagactgtccttggaatgtaagcagatggtaaaagaaaatttga 730
Query: 543 attgtggaatgcttttaatag--tctacaaaagtacaggtcatagctatgactgtaagtg 600
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 731 attgtggaatgcttttaatagagtctagaaaagtacaggtcatagctatgactgtaagtg 790
Query: 601 gattaaggtacctacagaagagagaaatatagaggagagctgggctaggtgagaagtctt 660
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 791 gattaaggtacctacagaagagggaaatatagaggagagctgggctaggtgagaagtctt 850
Query: 661 tgctagaattgtggcatagatttccaccaaaca 693
|||||||||||| || |||||||||||||||||
Sbjct: 851 tgctagaattgtagcctagatttccaccaaaca 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_o03.g1 MSMg01no316_o03.g1 CHROMAT_FILE:
MSMg01no316_o03.g1 PHD_FILE: MSMg01no316_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:45 2005
(246 letters)
>mm_chr17_52707812_52708457
Length = 646
Score = 451 bits (233), Expect = e-131
Identities = 242/245 (98%)
Strand = Plus / Minus
Query: 2 atataattaggtcttttcattatctttttacctcccctaattgtctaaaatgtatgtata 61
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 446 atataattaggtcttttcattatctttttacatgtcctaattgtctaaaatgtatgtata 387
Query: 62 ttattttattattactttttgaaacagcataatataggtaaatatacttgcatatttata 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttattttattattactttttgaaacagcataatataggtaaatatacttgcatatttata 327
Query: 122 actaattacaattaacatttattctcttatcaataagctttatttggtaagtgagagtca 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 actaattacaattaacatttattctcttatcaataagctttatttggtaagtgagagtca 267
Query: 182 attcatattttctttgaaaatacttagaaagatgccatttaagatatttagtgaattttt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 attcatattttctttgaaaatacttagaaagatgccatttaagatatttagtgaattttt 207
Query: 242 caaaa 246
|||||
Sbjct: 206 caaaa 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
