BAC Information

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BAC

Clone NameMSMg01-317K03
Chromosome17 (Build37)
Map Location 85,414,503 - 85,414,789
singlet/doubletsinglet
Overlap genePpm1b
Upstream geneZfp36l2, Thada, Plekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc, LOC668848, 1110020A21Rik
Downstream geneSlc3a1, Prepl, LOC100043901, 1700106N22Rik, EG668850, LOC383282, LOC100043902, Six3, LOC100043717, Six2, LOC100043903, Srbd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317K03.T7 (MSMg01no317_k03.b1)MSMg01-317K03.TJ (MSMg01no317_k03.g1)
ACCAG437647AG437648
length784818
length of high quality
(start - end)
290 (136 - 425)163 (73 - 235)
definitionCHROMAT_FILE: MSMg01no317_k03.b1 PHD_FILE: MSMg01no317_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:40 2005CHROMAT_FILE: MSMg01no317_k03.g1 PHD_FILE: MSMg01no317_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAAGAATATTTCCCCTTGTATTGAAGAAAATGTGATTAAAAGTT
TCCCCCAATTTTCAGAATCAATTGCATCCTTAGAAGGTTATAAGGCTACC
AATGAGTCTTCTAGATCGCCAGCGCCCTACAGGAAGAGAAAGGAAGAACA
GGGTTATTACACCAGTACCACCTCCAGGGTGGCTGCATTTCACAAGAGAA
CACATCAGGTGAACAATTTCCCTTCCTTCCTTCCTTCCTTCCATTTGAAA
TAAAGCATCTGAACAGAGCGATGTGTGCTCTCTATAATGTGTGGCACGTG
TATAACATACAAACTGGAATTTTTCTTCTCCCATCCCTTCCCACCCAATG
GCCTTCTTTTCCCAAAAACACTCACCACCCATCCTGGCTTGGAAAAAATG
TATCAAAATAAATACATCAGCTACAATGTCTGAAGATCCCAAACTTTTAA
ATTATGGTATATTATGCAACTGGAAACACGAATATAAAAATATAAGCACA
AGTTAATGTATAGACAAAAAAACCAAAAAGCTTAAAATATCTGGGTATTT
ACAGCATCCTCCACTAAAAATATCAATTTTTACCAAAGCCAAAACACAAA
ACCTATTTTAAAGTAGCTTAGGATTCTTATACGTGTTACCCACCCGATGA
ATACTTATAACCAATGCTCATGGGTAGATTTTCCTTAAATAGTTTCATGT
GGCCAGCTGTCCTAAAGGATGGAGTTTCCCGCAC
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTGGATTTACTGATGGCTGTGAACTGC
CATGTGGGTGCTGGGAATCCAGCCCAGGTCCTCTGAAAGAGTAGCTGGTG
CTTTTAATCTTAATCGTTTCGGAGTGCCTTAGACAGTAGTACAAGATGAT
AGAGAAGACGAGGTCTCCGCTAGTGTGGAGTGGGTCTCTATGGTGTGATT
ATATCTTCCTGCAAGGTATTAGGTCTATGATGTGCGCATGCCTTTTAGTT
CCCAGTTACTGGGGTAAAGGGGCAAGAGGGTAGGGCCAGGATTTTTGTAG
TTTTTGAAGAACCAACCCCTTAATTTCCAAACAAAAAGGCCAGAGGCTCC
CCAAAGGAAATGGGCCCAGGGGGGCTTTTCTCCCCCATAAGAAAACCTCC
CCTTGTGGAAGGGCGCGGCCCTTAAAAAATANTTCTCCCCCGTTCCTTTT
TTTATTTCTTTTCTCTCTCCCCCCCCCCCCATATTTTTTTTTTTTTACCT
GGGTTATCTCGCCTTCCCTCGCCTTGTATTTTATCATCTCTCTTATTTTT
ACTTTTCTTTTTCTTTTCAGTATTCAACTACTATTTTACTTTTTTTTTTT
CACTCTCTTTCTTCCTTACCCTCTTTTTCCCCCGTTTTATTTTTTGTCTC
ATAATCTATTTTCATTTGTATTTTTCTTATTATTCTAATCCCGTCTCTTC
TACATTTCTGACTTTTTGGATATATCTCACTTAATCGCGTTTATTTTCCT
CCTTCTCGATATAATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_k03.b1 MSMg01no317_k03.b1 CHROMAT_FILE:
MSMg01no317_k03.b1 PHD_FILE: MSMg01no317_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:40 2005
         (290 letters)



>mm_chr17_85414146_85414835
          Length = 690

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggttataaggctaccaatgagtcttctagatcgccagcgccctacaggaagagaaaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ggttataaggctaccaatgagtcttctagatcgccagcgccctacaggaagagaaaggaa 585

                                                                       
Query: 61  gaacagggttattacaccagtaccacctccagggtggctgcatttcacaagagaacacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gaacagggttattacaccagtaccacctccagggtggctgcatttcacaagagaacacat 525

                                                                       
Query: 121 caggtgaacaatttcccttccttccttccttccttccatttgaaataaagcatctgaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 caggtgaacaatttcccttccttccttccttccttccatttgaaataaagcatctgaaca 465

                                                                       
Query: 181 gagcgatgtgtgctctctataatgtgtggcacgtgtataacatacaaactggaatttttc 240
           ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 464 gagcgatgtgtgcactctataatgtgtgacacgtgtataacatacaaactggaatttttc 405

                                                          
Query: 241 ttctcccatcccttcccacccaatggccttcttttcccaaaaacact 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttctcccatcccttcccacccaatggccttcttttcccaaaaacact 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)