BAC Information

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BAC

Clone NameMSMg01-317N11
Chromosome17 (Build37)
Map Location 35,169,917 - 35,200,956
singlet/doubletdoublet
Overlap geneMsh5, Clic1, Ddah2, AU023871
Upstream geneRxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23
Downstream geneG6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317N11.T7 (MSMg01no317_n11.b1)MSMg01-317N11.TJ (MSMg01no317_n11.g1)
ACCAG437799AG437800
length730738
length of high quality
(start - end)		683 (48 - 730)654 (81 - 734)
definitionCHROMAT_FILE: MSMg01no317_n11.b1 PHD_FILE: MSMg01no317_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:54 2005CHROMAT_FILE: MSMg01no317_n11.g1 PHD_FILE: MSMg01no317_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,200,274 - 35,200,956)(35,169,917 - 35,170,554)
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATCTGCTTCTGCCTCCCAACTTCTGAGTTTAAAGGCACTGCCT
GGCCCAATGAAGCATTTCAAACTTTAGACATAGACCTGCCTCGTTACCGG
TCTGACTGCACTCCCCCTGCTCATTGGCTGCTGCTGCTGCTCATCCACTG
AAAGGTTGCCAGTGATGTCCTACCACCAGATAACATTCACCCCTGTTTAA
ACCAGGGTTTACTTTGTTGCTATTGTCTTTGTAGAAGCACTGTTCTGCTC
ATCTCTTTGTTTCTCCTCCATACTCTTCTAGGAAGCTGGCCAATCAATCT
TCAGCCCCCAAATGATACACAGTAGTCCTTCCAAGCCAGATCTCAGACCT
AGTTCACTCTGTCCAGATGGCCTCAGGCATTTTGCCCAAGGCTTGTCAAA
CCTGACTCAGTCATTTCTTAAGCCATCCCCTGGGTCCTCCTCTGAAAGCT
CTTGAAGAACCCAAGTTGTCCAAGCCAGAAACTGGGGTCAGAGTACACCA
TCTCCTCTCCCACACAAGGACTTATCAGGACCCTAACCCGCCGCTTCCAC
TCCTTTTAAAGACAGGCTCTCTTATGGCTGAGGCTGACTTTGAAATCTCC
CTCTCCTTATGTCTACCTTCAGTGTTTGGATAAAAGTGATTGCAAGCATG
CACCGCCACACAAGGCCTTGTCTGTAGCAG

NCCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATTATCCAGGCGTGGTG
GTTGGTGCATGCCTGCAATCCAAGCCCTCCAGAGTGGGAGCAGGAGGATC
AGGAGTTTGAGGCTGTCCTTAGTGATATACTGAGTTTGAGGCTAGCCCAT
GCTACTGGAGACTCTAAAGGAAGAGCTGTCTTCTGGCTGCAGGCTGATTC
CCATGTATGTGTCTAGCTGCGCATGGATCGAATGACTGCCCCAGGACCCC
CAGGCCTAGGACCCACACGCCCAGCACTCACTGGCATCTATGTCAGGGTC
TATGTTAGGGAGGACTGTGAAGCGATTTTCAGCAAGACTTTCCTCAAAGT
CCACCTGAGGAGACAGATTAGACGCCCAGCTTCTTAGCACCCAGCACCCT
CTCTCTGTTCTGTCCCCCGTTCTCCTTGGGCCCCAGATCCCCCTTTAATC
CTCATCTTCAGACACTTCCTCTCAGCATGTTGTTTTGTCACCAGGTGACC
CCACATCTCCCATGCGCCCCCACCTCCCACACCACATACTCCAAACCCCA
GACCCTTTCTACTCCTCCATCCTGTCCCACTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCTCGNNTGTCTG
GCTTCCGCTCACCACCTTCCCGATGAAGCTGGTAATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_n11.b1 MSMg01no317_n11.b1 CHROMAT_FILE:
MSMg01no317_n11.b1 PHD_FILE: MSMg01no317_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:54 2005
         (683 letters)



>mm_chr17_35200018_35201104
          Length = 1087

 Score = 1278 bits (661), Expect = 0.0
 Identities = 676/683 (98%), Gaps = 4/683 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctgcttctgcctcccaacttctgagtttaaaggcactgcctggcccaatgaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 gaattcatctgcttctgcctcccaacttctgagtttaaaggcactgcctggcccaatgaa 880

                                                                       
Query: 65  gcatttcaaactttagacatagacctgcctcgttaccggtctgactgcactccccctgct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 gcatttcaaactttagacatagacctgcctcgttaccggtctgactgcactccccctgct 820

                                                                       
Query: 125 cattggctgctgctgctgctcatccactgaaaggttgccagtgatgtcctaccaccagat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 cattggctgctgctgctgctcatccactgaaaggttgccagtgatgtcctaccaccagat 760

                                                                       
Query: 185 aacattcacccctgtttaaaccagggtttactttgttgctattgtctttgtagaagcact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 759 aacattcacccctgtttaaaccagggtttactttgttgctattgtctttgtagtagcact 700

                                                                       
Query: 245 gttctgctcatctctttgtttctcctccatactcttctaggaagctggccaatcaatctt 304
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 699 gttctgctcatctctttgtttctcctccgtactcttctaggaagctggccaatcaatctt 640

                                                                       
Query: 305 cagcccccaaatgatacacagtagtccttccaagccagatctcagacctagttcactctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 cagcccccaaatgatacacagtagtccttccaagccagatctcagacctagttcactctg 580

                                                                       
Query: 365 tccagatggcctcaggcattttgcccaaggcttgtcaaacctgactcagtcatttcttaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tccagatggcctcaggcattttgcccaaggcttgtcaaacctgactcagtcatttcttaa 520

                                                                       
Query: 425 gccatcccctgggtcctcctctgaaagctcttgaagaacccaagttgtccaagccagaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gccatcccctgggtcctcctctgaaagctcttgaagaacccaagttgtccaagccagaaa 460

                                                                       
Query: 485 ctggggtcagagtacaccatctcctctcccacacaaggacttatcaggaccctaacccgc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ctggggtcagagtacaccatctcctctcccacacaaggacttatcaggaccctaacccgc 400

                                                                       
Query: 545 cgcttccactccttttaaagacaggctctcttatggctgaggctgactttgaaatctccc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cgcttccactccttttaaagacaggctctcttatggctgaggctgactttgaaatctccc 340

                                                                       
Query: 605 tctccttatgtctaccttcagtgtttggataaaagtgattgcaagcatgcaccgcca--- 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||   
Sbjct: 339 tctccttatgtctaccttcagtgtttggataaaagtgattgcaagcatgcaccaccaacc 280

                                  
Query: 662 -cacaaggccttgtctgtagcag 683
            ||||||||||||||||||||||
Sbjct: 279 acacaaggccttgtctgtagcag 257


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1087
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1077
Effective search space:   724821
Effective search space used:   724821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no317_n11.g1 MSMg01no317_n11.g1 CHROMAT_FILE:
MSMg01no317_n11.g1 PHD_FILE: MSMg01no317_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:54 2005
         (654 letters)



>mm_chr17_35169717_35170770
          Length = 1054

 Score = 1160 bits (600), Expect = 0.0
 Identities = 632/652 (96%), Gaps = 14/652 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgattatccaggcgtggtggttggtgcatgcctgcaatccaagccctccagagtgggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgattatccaggcgtggtggttggtgcatgcctgcaatccaagccctccagagtgggag 260

                                                                       
Query: 61  caggaggatcaggagtttgaggctgtccttagtgatatactgagtttgaggctagcccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggaggatcaggagtttgaggctgtccttagtgatatactgagtttgaggctagcccat 320

                                                                       
Query: 121 gctactggagactctaaaggaagagctgtcttctggctgcaggctgattcccatgtatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctactggagactctaaaggaagagctgtcttctggctgcaggctgattcccatgtatgt 380

                                                                       
Query: 181 gtctagctgcgcatggatcgaatgactgccccaggacccccaggcctaggacccacacgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctagctgcgcatggatcgaatgactgccccaggacccccaggcctaggacccacacgc 440

                                                                       
Query: 241 ccagcactcactggcatctatgtcagggtctatgttagggaggactgtgaagcgattttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagcactcactggcatctatgtcagggtctatgttagggaggactgtgaagcgattttc 500

                                                                       
Query: 301 agcaagactttcctcaaagtccacctgaggagacagattagacgcccagcttcttagcac 360
           |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 501 agcaagactttcctcaaagtccacctgaggagacagattagacgtccagtttcttagcac 560

                                                                       
Query: 361 ccagcaccctctctctgttctgtcccccgttctccttgggccccagatccccctttaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccagcaccctctctctgttctgtcccccgttctccttgggccccagatccccctttaatc 620

                                                                       
Query: 421 ctcatcttcagacacttcctctcagcatgttgttttgtcaccaggtgaccccacatctcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcatcttcagacacttcctctcagcatgttgttttgtcaccaggtgaccccacatctcc 680

                                                                       
Query: 481 catgcgcccccacctcccacaccacatactccaaaccccagaccctttctactcctccat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catgcgcccccacctcccacaccacatactccaaaccccagaccctttctactcctccat 740

                                                                       
Query: 541 cctgtcccactcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctc 600
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   
Sbjct: 741 cctgtcccactcctcctcctcctcctcctcctcctcctcctcctcttcctcctcctc--- 797

                                                               
Query: 601 ctcctctcctcgnntgtctggcttccgctcaccaccttcccgatgaagctgg 652
                      |  |||||||||||||||||||||||||||||||| |||||
Sbjct: 798 -----------gggtgtctggcttccgctcaccaccttcccgatgaggctgg 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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