BAC Information

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BAC

Clone NameMSMg01-318N15
Chromosome17 (Build37)
Map Location 67,046,857 - 67,218,667
singlet/doubletdoublet
Overlap genePtprm
Upstream geneRab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599, LOC100043875, 1110012J17Rik, LOC100043876, Rab12, 9130404H23Rik
Downstream geneLrrc30, Lama1, Arhgap28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318N15.T7 (MSMg01no318_n15.b1)MSMg01-318N15.TJ (MSMg01no318_n15.g1)
ACCAG438534AG438535
length768759
length of high quality
(start - end)
234 (130 - 363)293 (73 - 365)
definitionCHROMAT_FILE: MSMg01no318_n15.b1 PHD_FILE: MSMg01no318_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:06 2005CHROMAT_FILE: MSMg01no318_n15.g1 PHD_FILE: MSMg01no318_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,218,435 - 67,218,667)(67,046,857 - 67,047,149)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATCCGCGGA
ATTCAACAGATATGACATAAAAATAAAGTTTGGTTGTTTTTTTTTTTTAA
TTGAAGTTTTAACAAAAATTTTGGCAGATTGTAAATATGCTACAAAGGCT
TTGATATATCTTCACCTTATTTTACTTTTGTTTCATCTTCACAGCATTTT
AAAGGCCACACTAACAATCTGCAAATGCCCTCTTTGCAATTTATACCGTT
CACAGCTGGGAATTAGAGTAGACAGTATATAATTGTCTTGTTTTAAGATT
TTCATGTATGCATGCCTTAAGCCTTTTGCTTAGTCCCAGTGAACTCTAAC
TGGGAATGCTCATTTTATATTATTCCCACCTCCCGCAGCAAGGCCACCTC
GCTTGAGGACCTCTTATTCCCCCCCCAATAAAAAAACAAGATTTCCAGTT
AGAATGGCAAAGCCACTGAACATTCCCAGGACCATCTCAGAGAGAACTAG
GTTTTCTTGAAAAAAAAAAAAGGATAAGCGACCTATCTATGGCCTGCTTA
CCCCCTTGCTGTATGCATTCTTAGCTGCTTTTTATTCTTAGATGCCCTAG
ATTAATGAATAGGTCTGTGTTCCTCTTTAACTACAAAAGGGAAGGCAGCA
TTTTAAACAGCAAGGGTACGTTGTGTCATTGAAGAGATGCCGTGCTTGTT
AAGTGCTAAAACCTTAAGATTATTTCATCCAAAATCAACCTGTTAAATTT
AACAATGCATTAAGTCTT
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGATAAATCGATCATTTCTGAGTAGCA
GCTGTGCAGGTCTGCGTCCTGCCCACCACCAGGCTCTTGACGGGAGAGCC
TGTGGGCCTCTGAGGGGCAGAGTGTCTCTCAGTCACCTCCACCTTCCCCA
CAGCGTACCTGTGGCACTTCTCTGGACGGACTGCAGTTTGCTTCACCTCC
GGCCCCTCCCTATGTCAGCAGAAAGAAGGGGACAAGGAGAGTCCCTGTTA
TGGCCTACAGCGCTTCCCGGAGATGCAGCCCTATCCATGCGTATGGGATG
AGGTGGAATAGAATCTTTGCATGGCATTCGCCCAGGGCTGAGAGCGAAGT
GTGAGTGAATATGGACCCCCCCCCCGCCTCATGCAAGAGTGCCTGACTGA
TGGGGCTCCCTGAGGGCCCTTCAGTCTCTTTTGGACTTTGGGCCTTAGAA
AGCCTGAAGGGGCTGAGGGAGTCCGGGAGCACTGCGGACCGGACCACTGT
CTCAGCCCTGACACCAATTTATTTTTGGGAGATGCAAGTGGATGTTCAAC
AGGGGACGGCACACTTATCAAGTTTAGATGGCATCTCTCTAGATGTAGAA
AACTTTGCTTTGTGAACCAAGAAAGAGAAATGGGCAAAGATTAAAGGTTT
AAATGAATATAGCGTAATATACGTTATCTTTGGGGTTAGTTAAAAAATAT
TACGATTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_n15.b1 MSMg01no318_n15.b1 CHROMAT_FILE:
MSMg01no318_n15.b1 PHD_FILE: MSMg01no318_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:06 2005
         (234 letters)



>mm_chr17_67218235_67218868
          Length = 634

 Score =  427 bits (221), Expect = e-124
 Identities = 230/233 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaaatatgctacaaaggctttgatatatcttcaccttattttacttttgtttcatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgtaaatatgctacaaaggctttgatatatcttcaccttattttacttttgtttcatctt 374

                                                                       
Query: 61  cacagcattttaaaggccacactaacaatctgcaaatgccctctttgcaatttataccgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cacagcattttaaaggccacactaacaatctgcaaatgccctctttgcaatttataccgt 314

                                                                       
Query: 121 tcacagctgggaattagagtagacagtatataattgtcttgttttaagattttcatgtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tcacagctgggaattagagtagacagtatataattgtcttgttttaagattttcatgtat 254

                                                                
Query: 181 gcatgccttaagccttttgcttagtcccagtgaactctaactgggaatgctca 233
           ||||||||||||||   ||||||||||||||||||||||||||||||||||||
Sbjct: 253 gcatgccttaagccaagtgcttagtcccagtgaactctaactgggaatgctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no318_n15.g1 MSMg01no318_n15.g1 CHROMAT_FILE:
MSMg01no318_n15.g1 PHD_FILE: MSMg01no318_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:06 2005
         (293 letters)



>mm_chr17_67046657_67047349
          Length = 693

 Score =  528 bits (273), Expect = e-154
 Identities = 288/293 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgataaatcgatcatttctgagtagcagctgtgcaggtctgcgtcctgcccaccaccag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 201 ttgataaatcgatcatttctgagtagcagctgtgcaggtctgcgtcctggagaccaccag 260

                                                                       
Query: 61  gctcttgacgggagagcctgtgggcctctgaggggcagagtgtctctcagtcacctccac 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctcttgacaggagagcctgtgggcctctgaggggcagagtgtctctcagtcacctccac 320

                                                                       
Query: 121 cttccccacagcgtacctgtggcacttctctggacggactgcagtttgcttcacctccgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttccccacagcgtacctgtggcacttctctggacggactgcagtttgcttcacctccgg 380

                                                                       
Query: 181 cccctccctatgtcagcagaaagaaggggacaaggagagtccctgttatggcctacagcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccctccctatgtcagcagaaagaaggggacaaggagagtccctgttatggcctacagcg 440

                                                                
Query: 241 cttcccggagatgcagccctatccatgcgtatgggatgaggtggaatagaatc 293
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcccggagaagcagccctatccatgcgtatgggatgaggtggaatagaatc 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)