BAC Information

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BAC

Clone NameMSMg01-318O22
Chromosome17 (Build37)
Map Location 44,892,514 - 44,892,790
singlet/doubletsinglet
Overlap geneRunx2
Upstream geneDscr1l1, Enpp5, Enpp4, Clic5
Downstream geneSupt3h, 4930564C03Rik, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318O22.T7 (MSMg01no318_o22.b1)MSMg01-318O22.TJ (MSMg01no318_o22.g1)
ACCAG438592AG438593
length766893
length of high quality
(start - end)
289 (68 - 356)---
definitionCHROMAT_FILE: MSMg01no318_o22.b1 PHD_FILE: MSMg01no318_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:11 2005CHROMAT_FILE: MSMg01no318_o22.g1 PHD_FILE: MSMg01no318_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTCCAGG
ACTTTCAGAAAAAAACNGAGAAACCCTGTCTCAGGAAAAACAAACAAACA
AACAAACAATCAAACCAACAAACAAATAAATAAAAACATTGTCTTGGCTC
CTGGCAAATTTTGCAAACAGCCTCATACCAATCTTGAAGTTGCACTTCAA
CACTTTCGAAAGATATGTCAGTGTCAGAATGCCTACCAGAGAAACTCATT
TGAAGCTCATATTTACAAAATGAAGGCGAGCGAGAGATCCTCAAGACACC
ATTATTTCCTTTTATATTGACCAGAACCGCATGTGTCTCTTAATTGCTCT
TGTTTTTTTCTTACACCCCCCCCCATAAAATGTCAAAACCTCAGTTATAA
AAGGCTCCCCCCCNCTAAACTATGACAAATATTTTTAACATAGCTACTTA
ATAATTCCTTTTTGTTGGCAAACGCTGGAGAACGAGACACTTTATAAGCA
CTATAATTTATAGGTATAATCCATATTCAACGCATATTTTTCTTCCTAAA
CTTACAAGACTCATATGTGTGTCTGCGAATACAGCTTATCCTAATAAACA
TAATGTCCCTGTGCTCAATCCCCCAGCACTCCTATCTCAGAAAACAAATT
CACAGGGTACATGCACTAGAGTAAGTGTAACCTGCCTTAGCATTTTAACC
GAGCATTTTTTATCCATTTCCCTTAAGTCCCTACCACTTAATACCTAAAA
ACATGGATTTGCAGTN
GGAGGGCCGGGGGGCGCCGGTTCCCCAAAAGGAGGGGGAACAATAGATTT
TCCAGAAAAAGCCGGGCAGGAGGAGAAAAGGATGATGAGGAGAAGGAGAC
GGATGGACCCCGAAAAGGAGGAGGGTAAGGAAGAGGAGACAGGAATATAG
CTCCCTGTTGGCGCCCTTTCGTTTATTATCCCCGTTACCCGGCTGACATG
GTGCCTGTATTCCCTCTCTTACTCCGCATTGGAGGACCGTGTGCGGCTTT
CTTCGATACACTTCTTGCAGCGCCCGTCCCTGTTCTTTTCGATTATTCAT
TCCGCGCTAGACACGCCCCCCTTGTTTTTTCACCACTTCAGTCACCGCGT
TAGAGCTCTTCCCACCCCGGCGTTTTGTTTTTTTCCCCCCCCCCCCCTCC
CCCTTTCTGCTCGGCATTGGGTTCTGTTGTTCCGCCTCCCCTCTTTTAAA
AAAAAAAAAAAATATCTCCTGTTTGGGGGGGCGTACCCCGAACGCTTCAT
TCGTTTCTCTCTTCCTTAAAATCTCTCCCGTTTCCAGCGCAATTTCCCCC
GCTCCCATATAGCGTCGCCCCATTGTTTTCGCCCTTGTGTCAATATGCGG
TTAATCGGGTACAACGAATACGCGACCCTTTACACTCGGTCTCTCCCGTC
TCCATTTTGTTCGCACTATTAGCCTTGATTCCACCTCCTCGCTTCTCTTA
TAGTCGCGCGCAGATTATTGGCGGCAGTTATGATGATATCTATGCGCCGG
TCCCGACTTCTGCAGGCTGTACCGGATGCTCACATTTCAGTGGTGCAGTC
CTACTGGGTTCATTCCGTGTGCGTGATTCTCGTGCATTTGCTTATCGCGG
TATTATGGTGACCCTAGCAAGCCGGTTCCGTTATACAATATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_o22.b1 MSMg01no318_o22.b1 CHROMAT_FILE:
MSMg01no318_o22.b1 PHD_FILE: MSMg01no318_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:11 2005
         (289 letters)



>mm_chr17_44892247_44892935
          Length = 689

 Score =  418 bits (216), Expect = e-121
 Identities = 266/286 (93%), Gaps = 9/286 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagaaaccctgtctcaggaaaaacaaacaaacaaacaaacaatcaaaccaacaaacaaat 60
           |||||||||||||||||||||||| || ||| ||| |   |||   |  || ||| ||||
Sbjct: 544 gagaaaccctgtctcaggaaaaac-aataaataaata---aat---a--aataaataaat 494

                                                                       
Query: 61  aaataaaaacattgtcttggctcctggcaaattttgcaaacagcctcataccaatcttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aaataaaaacattgtcttggctcctggcaaattttgcaaacagcctcataccaatcttga 434

                                                                       
Query: 121 agttgcacttcaacactttcgaaagatatgtcagtgtcagaatgcctaccagagaaactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 433 agttgcacttcaacactttcgaaagatatgtcagtgtcagaatgcctcccagagaaactc 374

                                                                       
Query: 181 atttgaagctcatatttacaaaatgaaggcgagcgagagatcctcaagacaccattattt 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 atttgaagctcatatttagaaaatgaaggcgagcgagagatcctcaagacaccattattt 314

                                                         
Query: 241 ccttttatattgaccagaaccgcatgtgtctcttaattgctcttgt 286
           || |  ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 313 ccgtacatattgaccagaaccgcatgtgtttcttaattgctcttgt 268


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)