BAC Information

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BAC

Clone NameMSMg01-320H16
Chromosome17 (Build37)
Map Location 11,873,918 - 12,033,665
singlet/doubletdoublet
Overlap genePark2
Upstream genePacrg, LOC100041113
Downstream geneAgpat4, Tdgf1-ps2, Map3k4, 4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192, Slc22a2, Slc22a1, Igf2r, Air, EG635617
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320H16.T7 (MSMg01no320_h16.b1)MSMg01-320H16.TJ (MSMg01no320_h16.g1)
ACCAG439700AG439701
length734675
length of high quality
(start - end)
236 (124 - 359)229 (62 - 290)
definitionCHROMAT_FILE: MSMg01no320_h16.b1 PHD_FILE: MSMg01no320_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:59 2005CHROMAT_FILE: MSMg01no320_h16.g1 PHD_FILE: MSMg01no320_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,033,432 - 12,033,665)(11,873,918 - 11,874,146)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTATTTTCTTTTTTTTGCACTTCTATCCATTATAAGTTAAAATG
ATTCCTAGCACACTTTTTGTGCTGAAATTCATAGTATACAGTAGGTGCTC
ATTATATTCTTTCCCATCTTCCTTGGAATGTAATGAGAGAAGGAAGAAAG
TTTGGGTTTTCTAGGACATAGACATCAATATTACAGTGATGTACTTACTA
TATTGCCATAACTAATCAGGGCAATATTAAGTTTGATTATTGCTTGATTA
AATTCTAGGAGAATGCTAAGTGGCTCAACTTGCATGCAAATCTAAGAAGA
TTATTACTGTTGGCTTCCTTTCCTACTAATTACACAGTGAGTCTGAAATA
AATATGGAAACAATTTGCAAACATTGGTGTAAGTTAGAGAGAAGGCTCCA
TTATCTGAACAGAGCACTCGGGTAACAGAAGTTCTTTCAAGAAGTCTAAG
GTTCTCAATAAAACTAGCTGTGAGGTTATTGTGGAAATGAATGCATGGAG
GATCCAGGTAACAACTCATGCCTGTAATGTATGGAGATGTAGCTTGGACT
TGAATGAACATTTATATCTGCAATTCTAGAAGCTTACTCTATAAGGAATC
AAGGAGGCATACATACTGTGACTTTTTAACTCAATGATGTAGATAAGACC
CCATTTGCTTATCTTTCCCTGGCCTTTTCTGGTT
ATCCGCGGAATTCACCGTCACGTGACAGTAGGAGCTAATGTGTTCCACTG
CTTTTGTCCCACACTTGAGAGGTGAGATGGATCTTTCCCCTGCCTGTGTC
TGGGACCTGAAAATAGGACTCCAGTTGTGAGGAAATTACAAGTAGCAGGC
ATCTGGGTGGCATGCTGAGGCTGATGGCCATCTGCAGCCTCCCTCCGTGT
CTCTTAGTGCCTTTCTCATTCAGTACCATGGAGACCGGGCTCCTTGAGGT
CTGACATGACAGGAAGGGAACTGAGACACCAAGGTCGTGCCTGTNCTTTG
NTACTCCANGGCAGGCCCTGGGACAAATGAAACCTGCTCTGCAGGTGTAG
ATCATCAATGAAAAAAAAAAGCCTGTGAGACTTTAGCACCAAAACACAGC
CATGTCATCAAGAGGGGCACGAGCCTAGACCTCATTCTAATCATTCAGGA
AATAGAATAGTGCTCCAGCTCATGAGGATGGACAGAGGCTCTCATCAACT
TCTTCCCTCTTGTATCGTTGATCCTTACTCTTTGCTTACCCTGTTTCTGT
CTCTCATAACTCAGTTACACTCCTCGGATTTTGAGTTCTGGATGGGACTA
TCATTTTTGAGAATGTGAATGTACCAAGGGCCCCTTTCTTGAATCGACTT
GGGAATGATTATATCACTGCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_h16.b1 MSMg01no320_h16.b1 CHROMAT_FILE:
MSMg01no320_h16.b1 PHD_FILE: MSMg01no320_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:59 2005
         (236 letters)



>mm_chr17_12033232_12033867
          Length = 636

 Score =  445 bits (230), Expect = e-129
 Identities = 233/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaattcatagtatacagtaggtgctcattatattctttcccatcttccttggaatgtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gaaattcatagtatacagtaggtgctcattatattctttcccatcttccttggaatgtaa 375

                                                                       
Query: 61  tgagagaaggaagaaagtttgggttttctaggacatagacatcaatattacagtgatgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgagagaaggaagaaagtttgggttttctaggacatagacatcaatattacagtgatgta 315

                                                                       
Query: 121 cttactatattgccataactaatcagggcaatattaagtttgattattgcttgattaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cttactatattgccataactaatcagggcaatattaagtttgattattgcttgattaaat 255

                                                                 
Query: 181 tctaggagaatgctaagtggctcaacttgcatgcaaatctaagaagattattac 234
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tctaggagaatgcaaagtggctcaacttgcatgcaaatctaagaagattattac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no320_h16.g1 MSMg01no320_h16.g1 CHROMAT_FILE:
MSMg01no320_h16.g1 PHD_FILE: MSMg01no320_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:59 2005
         (229 letters)



>mm_chr17_11873718_11874346
          Length = 629

 Score =  420 bits (217), Expect = e-122
 Identities = 226/229 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacttgagaggtgagatggatctttcccctgcctgtgtctgggacctgaaaataggactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacttgagaggtgagatggatctttcccctgcctgtgtctgggacctgaaaataggactc 260

                                                                       
Query: 61  cagttgtgaggaaattacaagtagcaggcatctgggtggcatgctgaggctgatggccat 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cggttgtgaggaaattacaagtagcaggcatctgggtggcatgctgaggctgatggccat 320

                                                                       
Query: 121 ctgcagcctccctccgtgtctcttagtgcctttctcattcagtaccatggagaccgggct 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagcagcctccctccgtgtctcttagtgcctttctcattcagtaccatggagaccgggct 380

                                                            
Query: 181 ccttgaggtctgacatgacaggaagggaactgagacaccaaggtcgtgc 229
           ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 ccttgaggtctgacaggacaggaagggaactgagacaccaaggtcgtgc 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)