BAC Information

Click to search

BAC

Clone NameMSMg01-320I23
Chromosome17 (Build37)
Map Location 81,719,661 - 81,719,778
singlet/doubletsinglet
Overlap geneLOC100043704
Upstream geneSos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700
Downstream geneSlc8a1, EG668832, LOC100043707, LOC625467
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320I23.T7 (MSMg01no320_i23.b1)MSMg01-320I23.TJ (MSMg01no320_i23.g1)
ACCAG439761AG439762
length728715
length of high quality
(start - end)
89 (130 - 218)118 (202 - 319)
definitionCHROMAT_FILE: MSMg01no320_i23.b1 PHD_FILE: MSMg01no320_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:05 2005CHROMAT_FILE: MSMg01no320_i23.g1 PHD_FILE: MSMg01no320_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATAGTATTCTTCAGGGAGATTCTAGGCATGAATTAGATTTCCAG
CATCAGTGATTAGTACATAATTTTCCCTAGTAATTCATTTTTTCTGGACC
TCTGTGGTTTTCAAAAGAAAAATATAAGATGTGACCTCATCCAAAAAGAC
ATGAATGTAGCTCTAGGTGTTGGTGTGATATTGTCAACAACTAAACTGTT
TTATCTGTAAATTATTTCTAGTTTGCATGTATAAGCAATTCATTTCTAGT
ATCTTTTCTTTTACACCTGTATAGTCACTCTTTATAAAGAACCAAGCAAA
ATATACAAAAGGCTAGAGATATAATGCATCTGGCATACAACACATAGTTG
CCAGGCAGTTTCTAGGGAGCACTTCTAGATAAAGCATCATAGAGAACCAG
TCCGAAAATAGGACACATAGATGAAGCACTTAGATAATATACAGAGGAAG
AGGGAAGAGCTAGAAGCATCTACAGAGAAAAAGAGTATCCCACAGTTTCA
ATACTCTTAGTTAGGCTAAAGAGAAGAAGTTTCACTCCCTATGCACAACA
GAGAGAGATGGCTAAACGAATACTCTTCGGTCAGTACTGAAAACATTANG
AGGACTCTTTAACAAGGTTGTTAACAGTCTTCTTGGGGTTTTTTAGGTTG
GTAGGATAATAGGTTAATTAGAATGAGN
GCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGTCTGGAAGCCCTAGGTGGAATC
CTGACTCTATTGGACCTTTGCGCCATCATGTCTTCATTGAGAAGAGAGTT
GAACGTCAGACCTACATTTTCTAAGCTCTGAAGACCTTCTGTTAGTCTGG
AGGAAATCCTCTTTCTTGATAATTTGCTACGAGTACTCTCTTTTTAAGTT
TTCTAAGTTATTCAACAAAGCCTATATAAAATATTGAAGGTCTTTAGAAA
AAGGTATTAAGGGAATCAGCTTGTAGCTCTGACTGCTTCTAGCCCTTCCT
CAGACACCTACTTTTTATTTTAAGACCCCCCCCCCTCCGGGAGAGCTTCA
AACAGGCTTCTGACTTTAGGAGGAAGAATAATAACCTTTTGAGATGCCCA
CCTCCTGATATCTGAGAACTGAGATGTACTCGGTAGATCCAGAGGGATTG
TTTTACGTCGCCCAGAAAGTTCTAGCTTGTTTTTGAAGTGATAAGAACAA
TAATACGCGCTCGGGAATTTTCTTTCTGAGTTTGAAGCCATGTGAGAACA
GATGCGTGGGAGACAGATGGGTAGAAATAGGAAATTTTTGCTTGTGTTCT
CTGTACTCTACTGCGGGCTTCACCCTTGAAGTAGAACAATTTAAGTGCGG
CGCCGTTGTTTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_i23.g1 MSMg01no320_i23.g1 CHROMAT_FILE:
MSMg01no320_i23.g1 PHD_FILE: MSMg01no320_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:05 2005
         (118 letters)



>mm_chr17_81719461_81719978
          Length = 518

 Score =  213 bits (110), Expect = 3e-60
 Identities = 116/118 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaaatcctctttcttgataatttgctacgagtactctctttttaagttttctaagttat 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 201 ggaaatcctctttcttgataatttgctacaagtactctctttttaagttttctaaattat 260

                                                                     
Query: 61  tcaacaaagcctatataaaatattgaaggtctttagaaaaaggtattaagggaatcag 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaacaaagcctatataaaatattgaaggtctttagaaaaaggtattaagggaatcag 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 518
Length adjustment: 8
Effective length of query: 110
Effective length of database: 510
Effective search space:    56100
Effective search space used:    56100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)