BAC Information

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BAC

Clone NameMSMg01-320P12
Chromosome17 (Build37)
Map Location 22,456,862 - 22,457,166
singlet/doubletsinglet
Overlap genenone
Upstream geneA830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624
Downstream gene6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320P12.T7 (MSMg01no320_p12.b1)MSMg01-320P12.TJ (MSMg01no320_p12.g1)
ACCAG440065AG440066
length734783
length of high quality
(start - end)
309 (45 - 353)223 (183 - 405)
definitionCHROMAT_FILE: MSMg01no320_p12.b1 PHD_FILE: MSMg01no320_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:36 2005CHROMAT_FILE: MSMg01no320_p12.g1 PHD_FILE: MSMg01no320_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:36 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACAGGATGACCAAAAGAGTCAACTAACCTAGACTCTTGGGGCTCT
CAGAGACTGAACATTTAACCAAAGAACATACATGGGTTGGACCAAGGCCT
CCCCACATATATGTAGCAGATGTATAGCTTGGTCTTCATGTGTGTCCAGA
ACAATTGGAGCAATTATATTTAGAGGGCCCCCTCAGTCTGTCTGTGATAT
CCATCATTGTTTTCGAATTTGACATTCCCTCTCATCTATTATCCTTAACT
TCAGCAGGTCCTGTGGGTGAGACTGGACAGCCTATCATTGGCTTACGTCC
TGATATTTCTTATTACCCCCCCCCCCCCCCAAGTATGGATTCCATAGACC
TTGACTACTCTGGGTGTCATCAAAAACACAGTGTACGTTCCCTTCCAGTG
AGAATCCAGGGCTTCTTTATGGTGTCTCTTAACCAGGACTAAATCTCCAG
GCAGAACACATGAGGAGTGATTGGTGAGCCTAGTTCATGTAGGTTTCAAA
CATATATATGCATATAGGCCAGTCTGGTTCCTCTGGAGTGTCCGGATTGG
CTTAAGGATATCATGATTAAAAATATGAGATGGTGACTCACGCTACCGTC
TCGCCAGCAAAACAACCGTAGGCCACTCCGATCCTTCCTCAATACAGCCT
TTATTATTTCTCGAGAGATTGAAGCATCCGCTTC
CCTCCCCCCTCCGATATTCCTCTTTACATGTTAAGAAAAGTGNNNNNCCT
TTCTATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGATGTTTTCTAAGATCACCT
TTATAGGTAAAGCATTTTTCATCTCTCAAAAATTTGTAAGGTTTCTCTCC
TGTATGAACTCTCTGGTGGATATTAAGACTGCCTTTTTGGGTAAAGAATT
TGTCACACTCACTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGA
TGAATACTAAGACTGCCTTTGTGGGAAAAGTATTTTTCACATTCACTACA
TTTGTAAGGCTTCTCTCCTGTATGAATTCTCTGATGACTTCTAAGGCTGC
TTTTATTTCAATCCATTTGCNANACTATCCCATTTGTAAGGTTTCTCTCC
TGTATGAATTCTCTCATGAAATATAAATCAAAAACTAGAGTGAGGGGTTC
TTACATTCACTACATTTGTAAGTTTTCTTGCCTGTATGACGCATCTGATG
AATACTAAGACTGCTTTTTTGGTTAAAGGATTTGCCACATTCACTACATT
TGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGTGCTCTAAACGAGCAT
TTCTGGGCAAAACATTTGTCACATTCACTACATTTGTAAGGCTTCTCTCC
TGCATGAATTCTCTGATGTCTTTCTAAGATCACCAATTTGACTGAAACAT
GTTTCACATTCACTAACTTTGTAAAGGTTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_p12.b1 MSMg01no320_p12.b1 CHROMAT_FILE:
MSMg01no320_p12.b1 PHD_FILE: MSMg01no320_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:36 2005
         (309 letters)



>mm_chr17_22456495_22457203
          Length = 709

 Score =  536 bits (277), Expect = e-157
 Identities = 298/305 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacaggatgaccaaaagagtcaactaacctagactcttggggctctcagagact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gaattccacaggatgaccaaaagagtcaactaacctagactcttggggctctcagagact 613

                                                                       
Query: 65  gaacatttaaccaaagaacatacatgggttggaccaaggcctccccacatatatgtagca 124
           || ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gatcaaccaaccaaagaacatacatgggttggaccaaggcctccccacatatatgtagca 553

                                                                       
Query: 125 gatgtatagcttggtcttcatgtgtgtccagaacaattggagcaattatatttagagggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 552 gatgtatagcttggtcttcatgtgtgtccagaacaattggagcaattatctttagagggc 493

                                                                       
Query: 185 cccctcagtctgtctgtgatatccatcattgttttcgaatttgacattccctctcatcta 244
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 492 cccctcagtctgtctgtgatatccatcattgttttggaatttgacattccctcttatcta 433

                                                                       
Query: 245 ttatccttaacttcagcaggtcctgtgggtgagactggacagcctatcattggcttacgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ttatccttaacttcagcaggtcctgtgggtgagactggacagcctatcattggcttacgt 373

                
Query: 305 cctga 309
           |||||
Sbjct: 372 cctga 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)