BAC Information

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BAC

Clone NameMSMg01-321F24
Chromosome17 (Build37)
Map Location 82,026,527 - 82,026,840
singlet/doubletsinglet
Overlap geneSlc8a1
Upstream geneMap4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704
Downstream geneEG668832, LOC100043707, LOC625467, LOC668836, EG433141, EG625514
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321F24.T7 (MSMg01no321_f24.b1)MSMg01-321F24.TJ (MSMg01no321_f24.g1)
ACCAG440360AG440361
length773739
length of high quality
(start - end)
323 (44 - 366)307 (72 - 378)
definitionCHROMAT_FILE: MSMg01no321_f24.b1 PHD_FILE: MSMg01no321_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:06 2005CHROMAT_FILE: MSMg01no321_f24.g1 PHD_FILE: MSMg01no321_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATAATGTTGGTGAGGGGAAGAGAAATAGAAGGTGAATTTTTAAAACA
TGTAATATTCATGTGTAAAATTCTCACGCAATAATATAAATTTATTACAC
ATACATATGATATATATTATATATATATGTATATAATTGTAGACATCAGG
AATATAAATGGGTGCATACTCTTTTTAAATAAATGTCTGTGGTTTTTGGG
GGTGTCAATTCTAATTTAAGGATTTAGCACAAAGAACTAGTTTAAGATAC
AGGCTACATTTTGTTTCTTAAAAGATGTGTACTCTAGCACTAGTTATTTC
TATATAAAGAATAGTAATTTATTTTGAGGACCACCCCACCGAGGAGGAAG
AAAGGAAGGAGGGAAGGAATATACCCCCCCATTGAAAGAGAGAGAGAAGA
AAGAAAGAGAGAGAGAGGGAGGGAGGTAGAAATTTTTTTTTTATCTGCCG
TTTCCCCCCCCCTTCTTTTTCCTTGCCCCTTTTGCCCCCAGGTTTCATTT
ACTCCAATTACACGTCTTGCTATCACTATTGCCTTATTTTTTCTCCCATT
ATTTACCATCGTCTCCTTCGTTTTCTCATCTTCTTTTACCCTTTCATTAC
TCTTTTTGTTTCTGCCCTTTTATTGTCTTGCTTTTCCTTCTCCCCTCTCT
TCTATCTTCCTCCCCTCTTATTCCTTATATTAATATTGAAACTGCTCCTT
CATTCTTTTTTTCTTATTTTTTT
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTCATATTGAGCAGAACTTGAGTCTACT
TGGTGTCTTAGTTAGAGTTTCTCTCCCTATGCTTTACCAAAATAATTTGA
GGAGGAAAGAGTTTATTTCACCTTCTAGTTCCATCTTCAAAGGAAGTCAG
GAAGGAACTCAAGTTAGGAGTGCAGAGGCAGGAACTGAAGCAGAAGTCAT
GGAGCAACACTGGCTACTACCAGTTTCTCCCTATGGCTTGCTCAGGGTGA
CACCAGCCACAGTAGGCTGGACCCTACCATGCCAATCACTAACTAAGACA
ATCCCATACAAGGTTATCTTCAGACCAATGTTTAGGAGGCATTTATTTTT
TCAATTTATATTCCTCTTTCCACACGACTCTAGCTTGTGTCAAGTTAGCA
ACTACAACAAAGACAATAAGACAGATGTCACTTACCCCCAAAATATGTGT
CACTGTCCCACCTTTGGGGGTGTCTTGAAAGGCTGGTCACTGTGGTGTTT
TGCAGGCTTCATAGCTGAGATGTGTGTTTTTCTCCTCAGCACCTTACACA
TCACGTTTGGATACTACGAGAACTAGTCCTCAAGGGAGAGGATTGTGGCT
CAAGTCCTCCAAGTCCTGCAAGTCCCCCAAGCTCTCCAAGCCTCCCAAGC
TCTGTGTCTCAAGTGTCTTCATTAATAGAGNCTTACCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_f24.b1 MSMg01no321_f24.b1 CHROMAT_FILE:
MSMg01no321_f24.b1 PHD_FILE: MSMg01no321_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:06 2005
         (323 letters)



>mm_chr17_82026318_82027040
          Length = 723

 Score =  578 bits (299), Expect = e-169
 Identities = 313/319 (98%), Gaps = 5/319 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcataatgttggtgaggggaagagaaatagaaggtgaatttttaaaacatgtaata 64
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 210 gaattcataatgttgg-gaggggaagagaaatagaaggtgaatttttaaaaca--taata 266

                                                                       
Query: 65  ttcatgtgtaaaattctcacgcaataatataaatttattacacatacatatgatatatat 124
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttcatgtgtaaaattctcaagcaataatataaatttattacacatacatatgatatatat 326

                                                                       
Query: 125 tatatatatatgtatataattgtagacatcaggaatataaatgggtgcatactcttttta 184
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 --tatatatatgtatataattgtagacatcaggaatataaatgggtgcatactcttttta 384

                                                                       
Query: 185 aataaatgtctgtggtttttgggggtgtcaattctaatttaaggatttagcacaaagaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aataaatgtctgtggtttttgggggtgtcaattctaatttaaggatttagcacaaagaac 444

                                                                       
Query: 245 tagtttaagatacaggctacattttgtttcttaaaagatgtgtactctagcactagttat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagtttaagatacaggctacattttgtttcttaaaagatgtgtactctagcactagttat 504

                              
Query: 305 ttctatataaagaatagta 323
           |||||||||||||||||||
Sbjct: 505 ttctatataaagaatagta 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)