BAC Information

Click to search

BAC

Clone NameMSMg01-321O21
Chromosome17 (Build37)
Map Location 23,677,272 - 23,677,612
singlet/doubletsinglet
Overlap genenone
Upstream geneEG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030
Downstream geneEG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321O21.T7 (MSMg01no321_o21.b1)MSMg01-321O21.TJ (MSMg01no321_o21.g1)
ACCAG440768AG440769
length767752
length of high quality
(start - end)
372 (42 - 413)340 (68 - 407)
definitionCHROMAT_FILE: MSMg01no321_o21.b1 PHD_FILE: MSMg01no321_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:46 2005CHROMAT_FILE: MSMg01no321_o21.g1 PHD_FILE: MSMg01no321_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATAACGCGGAATTCCA
GGCTGGTTTGCGTAAGAAAGCAGAGCCTGGTGGTACAAGTCTGCAGTCCT
AGCACGTGGGAGGTAGAGACACTCCATCAAGGTCACCCTAGGCCAAGAGC
AAGCTAGAAGCCCAGCCTCAGCTATAAGAAACATTATCTTGGAATAAAAC
AAAGCTAAACATAGTGATGGAGGATTTTGATCCCAGCTCTCAGAAGGTAG
AAACAGGCATAGGTCTGTGAGTTCAAGGACAGCCTATTCTATAGAGAGAG
TTCCAGTTAGGGCTACATATAGTGAGACCCTGTCTCACAATATAAACAAA
CAAACAAACAAACAAAAAGTATCCAACTGGGAAGGAATTTACAGGAGGAG
GAACAGGTCCACAGCCCCCCCAGACCCCTCAAGGTGCATCCACCGTTCCT
ATGTCAATCCCTCTTCCCCCAATCAGGTCCTGCAGTTCAGAATGGCTTTG
GAGCAGGTAAAAGTGGGGGTGGAGGTTGGGGGAAGGACAGGGAAAGATGC
AGGGTATCCTGGGCTGAGTTTCTAGAAAGAAGTCTGTACGGATCTGTATA
CCTCTTCTAGACTTTGCAGGAGTTGGTAAAGCTCAGAACCCCGGTGAGAC
TCCTGCTACTCCCACCCTTGTTCATACACAGGTGTATCCCTTCCCGGGCT
CCAATCTCATTTTTTTCTCATGGCCTCCCCTATGCATTTGGGATATGGAC
ATCGTTTACGCCTGTTT
AGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAGTGGCACTCCAGTGGGCCAGGTCCCAGGCTCC
ACCCACTGTGCTGGCTAGGCCACCACGTGCCAGTTGGGTATCTGCTTTCT
TTGGTGGGAGTTGTTAGATAATTCAGCTCCTTCTAAGGGGCCTTTTAGTA
TTCCCATAGTATTCCCATCGACTTGCCCATAGAGATAGTACCCTGGGGCC
AAACCTTCTAGATGCAGACAAATGTTATGGCTGAAACCAATGGAACCAGA
CTCCAGGGGAGTGAGGTGTGAATCCTATACATTAGCCAACTGGCTGAACT
GTAACTGCGTCCCCCATTCTCGCGCGACCAGTGGGGCTGTTTGGCCCTGT
TTGGGAACACCCCCCGGGGAGGCTTATGTAATGGCTTTTCCTTGTCTCCA
CCTTGCTCCCTAGTCACAGACACAGCCTCAACAGCAGTCTCAGCCGCCAG
GCAAGGACTTCCCAAAGTGTAGCTTCTCTCCCGAAGTACAGGCTACTTTG
GAGCCGGCTCTGTGGTAAACTCCCAAATTTTTATCCCCACTCGACAGCTC
TTGCTAGGGGCAGAGCGCTACTCATTTGGGAATGAATACAAGCATTTAAG
GAAATGTAAGACAGCATGAGTTGTGTGGCTCGCTGCCCTAGGGGTATGAC
TCTCGCTTCTGGTGCGAGAGGTCCCGGGTTCAAATTCGGAAGAGCCCTGA
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_o21.g1 MSMg01no321_o21.g1 CHROMAT_FILE:
MSMg01no321_o21.g1 PHD_FILE: MSMg01no321_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:47 2005
         (340 letters)



>mm_chr17_23677072_23677812
          Length = 741

 Score =  590 bits (305), Expect = e-173
 Identities = 332/341 (97%), Gaps = 1/341 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtggcactccagtgggccaggtcccaggctccacccactgtgctggctaggccaccacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtggcactccagtgggccaggtcccaggctccacccactgtgctggctaggccaccacg 260

                                                                       
Query: 61  tgccagttgggtatctgctttctttggtgggagttgttagataattcagctccttctaag 120
           |||||||||||||||||||||||||| |  ||||||| ||||||||||||||||||||||
Sbjct: 261 tgccagttgggtatctgctttctttgatcagagttgtcagataattcagctccttctaag 320

                                                                       
Query: 121 gggccttttagtattcccatagtattcccatcgacttgcccatagagatagtaccctggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 gggccttttagtattcccatagtattcccatcgacttgcccatagagatcgtaccctggg 380

                                                                       
Query: 181 gccaaaccttctagatgcagacaaa-tgttatggctgaaaccaatggaaccagactccag 239
           ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 381 gccaaaccttccagatgcagacaaaatgttatggctgagaccaatggaaccagactccag 440

                                                                       
Query: 240 gggagtgaggtgtgaatcctatacattagccaactggctgaactgtaactgcgtccccca 299
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggagtgaggcgtgaatcctatacattagccaactggctgaactgtaactgcgtccccca 500

                                                    
Query: 300 ttctcgcgcgaccagtggggctgtttggccctgtttgggaa 340
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctcgcgcgaccagtggggctgtttggccctgtttgggaa 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 741
Length adjustment: 9
Effective length of query: 331
Effective length of database: 732
Effective search space:   242292
Effective search space used:   242292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)