BAC Information

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BAC

Clone NameMSMg01-322I02
Chromosome17 (Build37)
Map Location 43,014,141 - 43,014,451
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap
Downstream geneTnfrsf21, LOC100043770, Gpr110, Gpr116, Mep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1, Dscr1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322I02.T7 (MSMg01no322_i02.b1)MSMg01-322I02.TJ (MSMg01no322_i02.g1)
ACCAG441184AG441185
length762740
length of high quality
(start - end)
318 (45 - 362)217 (77 - 293)
definitionCHROMAT_FILE: MSMg01no322_i02.b1 PHD_FILE: MSMg01no322_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:29 2005CHROMAT_FILE: MSMg01no322_i02.g1 PHD_FILE: MSMg01no322_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAAGGCGTACTTTCTTGAAAAAAACAAAACAAAACAAAAAAACCAA
CACTAGGCACAATAGTTGGCAGCCAACACGTTGCTCCCCCATACTTGCTC
AGGCCTTGAAGAAGTTGACTTTTTCAAATAGGAGGGGAGGAAAATTAAGG
TCAAATTAATTAAATTTGTCAATAAGTTGAAGAAAGCTCGTGTTTGATTA
CATTAATCCTACGCCGGCCTTCATATTGACTCTAGAGGAAAAAAAATAAT
GCCTGGCAATGTTTCAAACCACGATGCCTAATTTAGAACGATTTCTACTT
CAAAAGAGGGTGTATTAAGTCATCTCCGGCCACCAAGAGACTCAAGGAAT
ACAGTAATGTATGCCTATGAAAAATTCACTGCATTCCTCACCTACCCCAA
AGAAAAACATTGCTTTTGACCTGCAGGGAACTCTGTAGGTGAACTGTGGG
GTCCCCACATTTGCGGGGGGGGGGGGTGGGAAGGTTTTTTTTTTTCCCTT
CCCCTTTTCCCTTTTCCCCTTTTTTTTCTTTTTTTTTTTTCTTTCTCTTC
CCTCCTTTTTCCCCCCTTTTTTTTCCCCTTTTTTTTCCCCCTCTCCTTTC
CCCCCGTTTTTTCCCTTTCTTTTTCCACTCTCTTTTCTTACCTCTAATCC
TTTTTCTTTTTTTCTCCCTTTTTTTCCCTCTTTTCCCCTTTACCCACTCT
CCTCCTTCTTTT
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTATTCTTTTTTTTTCCATTT
TTATTAGGTATTTAGCTCATTTACACTTTCCAATGCTATACCAAAAGTCC
CCCATACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGG
CCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGG
CCTCTCTTTCCAGTGATGGCCGACCAGGCCATCTTTTGATACATATGTAG
CTAGAGTCAAGAGCTCCGGGATATTGTTTAGCTCATTATGTTGTTCCACC
TATAGGGTTGCATATTTTTTTCCCCAGGCCGGNACCCCCTCTAGCTCCTC
CATTGGGAGCCCTGTGATCCCCCCCATAAAAAAAATAAGAAAATCCGCTT
CGGTGTGTGCTATGTCCCGGCATAGTCTCACAATAGACAGCTACATCTGG
GTCCTTTCTATAAAAACTTGCTAGTGTATGCAATGTAGCCAGTGTTTGGA
TGCTGATTATGGGTTGGATCCCTGCATATGTTAGCCCCCACCTGTACCAT
TTTTTCCTCTCACCTTCCTATTTTGTTTCTGTTACTCCCCCCCAGGGGGT
TCTCGCCCTCTCTTTCAAGGACCGTTCATATCGCCCCTATTTTCACCCTT
CACTTCTCCTTGAGTTTCCCGCGCGTCCCCCAAATTGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_i02.b1 MSMg01no322_i02.b1 CHROMAT_FILE:
MSMg01no322_i02.b1 PHD_FILE: MSMg01no322_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:29 2005
         (318 letters)



>mm_chr17_43013937_43014651
          Length = 715

 Score =  522 bits (270), Expect = e-152
 Identities = 303/316 (95%), Gaps = 7/316 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaaggcgtactttcttgaaaaaaacaaaacaaaacaaaaaaaccaacactaggc 64
           ||||||||||||||| |||||||||||||| |||| ||||| ||||||||||||||||||
Sbjct: 515 gaattcaaaggcgtaatttcttgaaaaaaa-aaaaaaaaac-aaaaaaccaacactaggc 458

                                                                       
Query: 65  acaatagttggcagccaacacgttgctcccccatacttgctcaggccttgaagaagttga 124
           |||||||||||||| ||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 457 acaatagttggcagtcaacacgttgctcccccatacttgctcaggcctt---gaagttga 401

                                                                       
Query: 125 ctttttcaaataggaggggaggaaaattaaggtcaaattaattaaatttgtcaataagtt 184
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 400 ctttttcaaataggaggggaggaaaattaaggtcatattaattaaatttgtcaataagtt 341

                                                                       
Query: 185 gaagaaagctcgtgtttgattacattaatcctacgccggccttcatattgactctagagg 244
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 340 gaagaaagctcgtgtttgattacaataatcctacgccggccttcatattgactctagagg 281

                                                                       
Query: 245 --aaaaaaaataatgcctggcaatgtttcaaaccacgatgcctaatttagaacgatttct 302
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aaaaaaaaaataatgcctggcaatgtttcaaaccacgatgcctaatttagaacgatttct 221

                           
Query: 303 acttcaaaagagggtg 318
           | ||||||||||||||
Sbjct: 220 atttcaaaagagggtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 715
Length adjustment: 9
Effective length of query: 309
Effective length of database: 706
Effective search space:   218154
Effective search space used:   218154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)