Query= MSMg01no322_j24.b1 MSMg01no322_j24.b1 CHROMAT_FILE:
MSMg01no322_j24.b1 PHD_FILE: MSMg01no322_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:38 2005
(545 letters)
>mm_chr17_90406004_90406954
Length = 951
Score = 855 bits (442), Expect = 0.0
Identities = 511/536 (95%), Gaps = 8/536 (1%)
Strand = Plus / Minus
Query: 17 gaattccagatattctccc--ttctaaattagaaccaaatcaatcatttagacattttgt 74
|||||||||||||| || | |||||||||||||||||||||||||||||| ||||||||
Sbjct: 751 gaattccagatattttcacaattctaaattagaaccaaatcaatcatttaggcattttgt 692
Query: 75 ttccttttctatttaattattttattaagatgagtgtctaagaatagagatgcttagggt 134
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 691 ttccttttctatttaattattttattaaggtgagtgtctaagaatagagatgcttagggt 632
Query: 135 atggaagtcagggaagttctaggtatagattgtctttccattccaaacattatataaatt 194
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 631 atggaagtcagggaagttcttggtatagattgtctatccattccaaacattatataaatt 572
Query: 195 tatgacttgaca---aacaagtgaatgtattttcttattactgagtactaatatatcaga 251
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tatgacttgacaaacaacaagtgaatgtattttcttattactgagtactaatatatcaga 512
Query: 252 ctttcggcataaacccctatctttgcttgctcttgtttagattcaatgtttgataagaaa 311
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cattcggcataaacccctatctttgcttgctcttgtttagattcaatgtttgataagaaa 452
Query: 312 ttgaaaataagtggaaataatgtagctctcctaccacgatagagaaattctgtattatga 371
|||||||||||||||| ||| |||| ||||||| || |||| |||| ||||||||||||
Sbjct: 451 ttgaaaataagtggaactaaagtagttctcctaacaaaatagtgaaagtctgtattatga 392
Query: 372 agacattgggcaaaggaagctgtcaagtaatgctcaggacggtttaaaaa-ataaattag 430
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 391 agacattgggcaaaggaggctgtcaagtaatgctcaggacggtttaaaaatataaattag 332
Query: 431 aacaatgagata-tttactttcatttagataaatgtgtgttttcgtttacagtcaattat 489
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aacaatgagatatttta-tttcatttagataaatgtgtgttttcgtttacagtcaattat 273
Query: 490 ttaaaatagcatccaaagtaattggttctaacatgagatttatacacacacacaca 545
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ttaaaacagcatccaaagtaattggttctaacatgagatttatacacacacacaca 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 951
Length adjustment: 10
Effective length of query: 535
Effective length of database: 941
Effective search space: 503435
Effective search space used: 503435
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no322_j24.g1 MSMg01no322_j24.g1 CHROMAT_FILE:
MSMg01no322_j24.g1 PHD_FILE: MSMg01no322_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:38 2005
(645 letters)
>mm_chr17_90249626_90250671
Length = 1046
Score = 1040 bits (538), Expect = 0.0
Identities = 600/646 (92%), Gaps = 41/646 (6%)
Strand = Plus / Plus
Query: 1 caccttagatttctgctgaatttttcttatcaagtttacaagaattaccaaattaacctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caccttagatttctgctgaatttttcttatcaagtttacaagaattaccaaattaacctt 260
Query: 61 tactctttgctatgaatggtatttctctttactgttgtagca-tttttttctaaagtata 119
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tactctttgctatgaatggtatttctctttactgttgtagcattttttttctaaagtata 320
Query: 120 aatatctaatgtagaatctgtaaggtctaaggaatatgcataccaagttcacttattatg 179
||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 321 aatatctaatgtagagtctgtaaggtctaggggatatgcataccaagttcacttattatg 380
Query: 180 accactttttcctaagataatagctacatagtctatgattgcatgttcatattaataatt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accactttttcctaagataatagctacatagtctatgattgcatgttcatattaataatt 440
Query: 240 atctgtttatgaagcactgaaatcgtacatttcaactgagaaactttaattttgatatca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctgtttatgaagcactgaaatcgtacatttcaactgagaaactttaattttgatatca 500
Query: 300 aagctaggaaatgctcctgtgattattatcagtgatgtggggggagcacatgtctcctgt 359
|||||||||||||||||||||||||| ||
Sbjct: 501 aagctaggaaatgctcctgtgattat----------------------------tc---- 528
Query: 360 gattattatcagtgatgtggggggagcacatgtcccattcgcatcatccattctcagagt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 --------tcagtgatgtggggggagcacatgtcccattcgcatcatccattctcagagt 580
Query: 420 ccgtgcctgggtacttgctccatctgtagtctgtggctttaaattctctggtctttggtt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ccgtgcctgggtacttgctccatctgtagtctgtggctttaaattctctggtctttggtt 640
Query: 480 atgtggccctttagctggagagtgtatgcttgcttattttattttgttatttatttgaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 atgtggccctttagctggagagtgtatgcttgcttattttattttgttatttatttgaaa 700
Query: 540 aagtctcactaggtaaattggagtggcctttaactcatttttattggatattttctttat 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aagtctcactaggtaaattggagtggcctttaactcatttttattggatattttctttat 760
Query: 600 ttacatttcaaatatcatctactttccctgtttcatccatcccaga 645
||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 761 ttacagttcaaatatcatctactttccctgtttcatccgtcccaga 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1046
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1036
Effective search space: 657860
Effective search space used: 657860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
