BAC Information

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BAC

Clone NameMSMg01-323E05
Chromosome17 (Build37)
Map Location 15,290,525 - 15,447,760
singlet/doubletdoublet
Overlap geneC330048F19
Upstream geneDact2, Smoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3
Downstream geneLOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323E05.T7 (MSMg01no323_e05.b1)MSMg01-323E05.TJ (MSMg01no323_e05.g1)
ACCAG441733AG441734
length1,1931,200
length of high quality
(start - end)		605 (133 - 737)697 (121 - 817)
definitionCHROMAT_FILE: MSMg01no323_e05.b1 PHD_FILE: MSMg01no323_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:37 2005CHROMAT_FILE: MSMg01no323_e05.g1 PHD_FILE: MSMg01no323_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,447,321 - 15,447,760)(15,290,525 - 15,291,221)
sequence
NCCGGTTGTTTNNNCTCATTGGCGCATAGACTCCTATAGGGAGAGGATCC
GCGGAATTCAGGTGAGGNAATGGCCCTGAAAGTACCCTTTCCTGCCCCTA
GTTTTAACACTGCCTTTAAGAAAGGGTAGCTAGGATCCCAGTGTATTTGC
CTCCAGGTCTGATGGCAGCCCCCTTTAGAAAACAGTGTTCACGGAGACCT
GGGTTTCAAGGGCTACAGAACTGGGTCTGCTTTTCCTCAGTGCTGCTCGC
TGCCAAGTTCCCTGTCCACCTTTCTACAATCTTAGGCCAATTTGCTTGAG
CAGCTGTTGGTCTGTCTGGAGACCCCTGACCATGGCCCTTGTATAGCCTC
TTCTCTGTTGCTATGCTAAAACACCATGACCAAGGCAGCTTAGGGAATGG
GGAGTTTACTTTGGCTCATGGTTCAGAAGGATAAGAAGGGTCCACAATGA
CACTGTTGGCATGGCAACAAGTGGCAGGCATGACAACAGAGACAGGACTT
GGGGACTAAAGGGCAGCCTCCAAGGCTAGCATTCTGCTTAGGGATTGGCT
ATACTAGTAGGTCAGTATACTTTGCCCTGGTCAGCTCTGACCCAAGACTG
AGGTCGGCTGCTCCCACATAACTCTTGCATATGCTACCAGGTTCCCTTTA
AGAGCAGCTAGTTTGGCCTGGCTGTCAGTGACACGGCCTTTGAAGGCATC
CTTCAACCCCAGCCCCTGTTTAAATTATGTTCATGTGTCTTAGCACAGAA
ACATCAGAGTGGAGTATTTCCATCTAGTGAGAAAAGCAGTTCACAGGGTG
GGAGAGAGAAATGGAAGGGCACCTTCAGTGAGACCTGATCAGCAGGGCCT
TCTTTCCTTTTTCTTCCCTGGGGAATACAATGCTCTCCGGAGAGAAAGAC
ATTTTTTTTTGAAGTGAGACCGTTCCAAGAAAAAACAACGCCCACAAAAA
AAATTTTTGTACATTTCCCCGTAAATTNAACAGAAGGGAAAGCTCCCCCT
TGCTCCGAAGCCAATTTTGTGTCCCAAAATTCCAAAAAAGCCTTCTTCTT
CTTCTCAAAGAAAACGGCCCGGGAATATCAAAAAAAAGACCCGGCGGCGG
ATTATCCATATGCCCCCCCTGGGGGGATTCCCGGGGTTTTCGGGGTCTTT
CCAAAGAACTTTGCCTCTCCCGAGGTTTAAAAAATGTTTTAAT

NCCCGCTTATTTNNNACCGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACGCCCTGTTTATGACA
TGGTCACCTTCTAGTCCCTTAACAATGACACCAGATGTCTTGTTTCTGAA
CACCGGAAACAACACCGCAGAGCTAATGTCCTCTTCATTTCCTGAGACCC
AGTGGACACAAACACAGGCTAATTCTCCACACGTCCTGAGTTGCCACAGA
CCTCTCAGGAGAAATCCTTTGAAGGTTGTTTACTTTGAACACATGAAGTG
CTGGACATGTGAAAGATAGGAGGGCTAGTTCCTTTCTCCGAGTTCAGCTT
TGATGACAATATCCAAGCTGCTAAAACATCCCAAAGTAGCTTCACTGCTA
CTCTTCTCTGAACCATGTTTGGGTGTTTCTTGGGGACAGCAGAACCACTG
ACTTCAGAGACAGAGTTGAATCTGCCTCCAGTGAAGGCACTTGGCTCTAA
ATACATCATTTTATCTGGACAAGAGGTGTCTCCTTCTCTATTACACAGCC
CCAAAGTCATGTCCAGCTCCTCTGGCTGAACTTAGGAGAAGATTTCCTAG
TCAGAGAGAGCTTAGCATTTGGGAAGGAAAGACAAGAATGAGAATACTCG
GTTGACATCACAGGGCTGGCTAATCTTAGACAATCACTGACCTAGTCAAT
AATCATATACATCCTAAGGACTTACAGGCATTGGGATGGAGTCCACCCCT
ATGTGAAAGCCTGTGTCCATAGCTTGTTGGCTTTGACCACTATGACAGTG
AGTGACATGGCTGAATTTACAAATGTGGGTCATAACCGTGTAAGTACTAA
TGTGTATCTGTTATCTTGGATTTCATCCACATCTTTCCTGGAGTCCCAGC
AACCCAGAACTTTGTCTGTAGCTTTTGCTCCACACCTGAACCTTCACATA
TATTTCTAAAAAAAAAGTGTGGCCCCGGCTTGAAGGGCTCCCCTTTTGTC
TCCCCAAAAAACCCCCCAAAAGCCTATTAAAAAAAGGGGGTTGGTGCCTA
ATTTTTAGGAAACCCCCCCCCCGGTTGGGGGAAAAAGGGGTAAAGCCCTT
TCCTAAAAAAAAATTTTGTTTCTGGGAAAATAGACCCACCCTAAATGGAG
AACTCTTCCTCTCTTCCCTTCGAAGAAAAGAATTTTTCTTTTTTTATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_e05.b1 MSMg01no323_e05.b1 CHROMAT_FILE:
MSMg01no323_e05.b1 PHD_FILE: MSMg01no323_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:37 2005
         (605 letters)



>mm_chr17_15446756_15447760
          Length = 1005

 Score =  828 bits (428), Expect = 0.0
 Identities = 437/440 (99%)
 Strand = Plus / Minus

                                                                        
Query: 166  gagcagctgttggtctgtctggagacccctgaccatggcccttgtatagcctcttctctg 225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 gagcagctgttggtctgtctggagacccctgaccatggcccttgtatagcctcttctctg 946

                                                                        
Query: 226  ttgctatgctaaaacaccatgaccaaggcagcttagggaatggggagtttactttggctc 285
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 945  ttgctatgctaaaacaccatgaccaaggcagcttagggaagggggagtttactttggctc 886

                                                                        
Query: 286  atggttcagaaggataagaagggtccacaatgacactgttggcatggcaacaagtggcag 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885  atggttcagaaggataagaagggtccacaatgacactgttggcatggcaacaagtggcag 826

                                                                        
Query: 346  gcatgacaacagagacaggacttggggactaaagggcagcctccaaggctagcattctgc 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825  gcatgacaacagagacaggacttggggactaaagggcagcctccaaggctagcattctgc 766

                                                                        
Query: 406  ttagggattggctatactagtaggtcagtatactttgccctggtcagctctgacccaaga 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765  ttagggattggctatactagtaggtcagtatactttgccctggtcagctctgacccaaga 706

                                                                        
Query: 466  ctgaggtcggctgctcccacataactcttgcatatgctaccaggttccctttaagagcag 525
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 705  ctgaggtcggctgctcccacataactcttgcatatgctaccagattccctttaagagcag 646

                                                                        
Query: 526  ctagtttggcctggctgtcagtgacacggcctttgaaggcatccttcaaccccagcccct 585
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 645  ctagtttggcctggctgtcagtgacatggcctttgaaggcatccttcaaccccagcccct 586

                                
Query: 586  gtttaaattatgttcatgtg 605
            ||||||||||||||||||||
Sbjct: 585  gtttaaattatgttcatgtg 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no323_e05.g1 MSMg01no323_e05.g1 CHROMAT_FILE:
MSMg01no323_e05.g1 PHD_FILE: MSMg01no323_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:37 2005
         (697 letters)



>mm_chr17_15290325_15291421
          Length = 1097

 Score = 1309 bits (677), Expect = 0.0
 Identities = 692/697 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaatgacaccagatgtcttgtttctgaacaccggaaacaacaccgcagagctaatgtc 60
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 aacaatgacagtagatgtcttgtttctgaacaccggaaacaacaccgcagagccaatgtc 260

                                                                       
Query: 61  ctcttcatttcctgagacccagtggacacaaacacaggctaattctccacacgtcctgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcttcatttcctgagacccagtggacacaaacacaggctaattctccacacgtcctgag 320

                                                                       
Query: 121 ttgccacagacctctcaggagaaatcctttgaaggttgtttactttgaacacatgaagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgccacagacctctcaggagaaatcctttgaaggttgtttactttgaacacatgaagtg 380

                                                                       
Query: 181 ctggacatgtgaaagataggagggctagttcctttctccgagttcagctttgatgacaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggacatgtgaaagataggagggctagttcctttctccgagttcagctttgatgacaat 440

                                                                       
Query: 241 atccaagctgctaaaacatcccaaagtagcttcactgctactcttctctgaaccatgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atccaagctgctaaaacatcccaaagtagcttcactgctactcttctctgaaccatgttt 500

                                                                       
Query: 301 gggtgtttcttggggacagcagaaccactgacttcagagacagagttgaatctgcctcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 gggtgtttcttggggacagcagaaccactgacttcagagacagagttgaatctacctcca 560

                                                                       
Query: 361 gtgaaggcacttggctctaaatacatcattttatctggacaagaggtgtctccttctcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgaaggcacttggctctaaatacatcattttatctggacaagaggtgtctccttctcta 620

                                                                       
Query: 421 ttacacagccccaaagtcatgtccagctcctctggctgaacttaggagaagatttcctag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttacacagccccaaagtcatgtccagctcctctggctgaacttaggagaagatttcctag 680

                                                                       
Query: 481 tcagagagagcttagcatttgggaaggaaagacaagaatgagaatactcggttgacatca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcagagagagcttagcatttgggaaggaaagacaagaatgagaatactcggttgacatca 740

                                                                       
Query: 541 cagggctggctaatcttagacaatcactgacctagtcaataatcatatacatcctaagga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagggctggctaatcttagacaatcactgacctagtcaataatcatatacatcctaagga 800

                                                                       
Query: 601 cttacaggcattgggatggagtccacccctatgtgaaagcctgtgtccatagcttgttgg 660
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 801 cttacaggcattgggatggagtccacccctgtgtgaaagcctgtgtccatagcttgttgg 860

                                                
Query: 661 ctttgaccactatgacagtgagtgacatggctgaatt 697
           |||||||||||||||||||||||||||||||||||||
Sbjct: 861 ctttgaccactatgacagtgagtgacatggctgaatt 897


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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