BAC Information

Click to search

BAC

Clone NameMSMg01-323E12
Chromosome17 (Build37)
Map Location 30,462,328 - 30,462,951
singlet/doubletsinglet
Overlap geneBtbd9
Upstream genePi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1, LOC100042885, LOC100042888, Zfand3
Downstream geneEG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323E12.T7 (MSMg01no323_e12.b1)MSMg01-323E12.TJ (MSMg01no323_e12.g1)
ACCAG441747AG441748
length1,1391,288
length of high quality
(start - end)
620 (129 - 748)274 (133 - 406)
definitionCHROMAT_FILE: MSMg01no323_e12.b1 PHD_FILE: MSMg01no323_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:39 2005CHROMAT_FILE: MSMg01no323_e12.g1 PHD_FILE: MSMg01no323_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCGGGCANNNNNNNGGCAGTGGGCGCTAAGACTCCTATGGGAGAGGATCC
GCGGAATTCAAGCAGGTCAGGAAGCCGTATAAGAGCCTGAGGCCATGGAG
GGATGTTCCTTACTGCCTTGATCAGCCCGCTCTCTTATAGAACCAAGATT
ACCAGCCCAGAGATGGCACCACCCAGAAGGGGACCTCTCCCCTTGATCAC
TAATTGAGAAAATGCCTTACAGCTGGATCTCATGGAGGCATTTCCCCAAC
TGAAGCTCCTTTCTCTGTGATAACTCCAAATGTGTCAAGTTGACACAAAA
CTAGCCAGTACACCTTCCCTATGCCCCAGCCCTGCAGGGGCAACGCAGAG
TCCTTGTTCTCTATGCCTCTTCGTTGCTATTCTGCTGATGCGAAGGGTAT
TTTTGTGAACAGAAAATCAGATCTTTCTTTTATATCACTTTATTTAACTT
GGACCCTTCGGATTTTTAATAACTTTTAATAATTAATTCTGACTATGGAA
TTTAAAAAGAATTTTACTTAATAAAATTACTCTTTATAAGTGAAAACCAA
GAAGCAGCATCAGAAAATGTGAAGAGCCCCAGTGAAACGTCTGCTTTTTT
TTTTTTTTACCTTGATAAAGATTTAACAGGCACTTAGAACTGTCTCCTTT
GGGTCACAAGGTAAAAGGAGGGTAAATGTCCGAAATCTCTGCCCTCATTC
TGTGTGTGTGTCCTGCTCTGGGGTCAGATCCCACTGACTGTGTTTAAGCC
TGTTAATCACTCAAAGTGGCTGTCCGTCTATCCATTTCATACCCTCTCAC
CCACACACAGAGGCAAGTGATTGTCCTAATCTTCAGTCACTCCAGAATTC
TAAATAAAAAAGCCCACCCCAGCCGGGCATGGTGGCACACGCCCTTTTTA
ATCCCATCCCTTGGAAGGGCAAAGCCCGGTGGAATTTCTGAACCTACAAA
GGGAGGTTCCAGAACGGCCGGGGGTATTCCAGAAAAACCCCTATTTTCGG
AAAAAAACCAAACAATTTAATCAATCCTTCTCAATCAAAAAAGCCCCCCC
CAAAAAAAAAAAACCCCCTCCCGAAAAAAGAGGTAATTAATAAAACCGTC
CTTTCTCAAAAACATTTGTTTTCCCTCCCAAACAAAAAA
CCATATTNNNNNAACGATGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCGTTAAAGCCTCANNTCANNAAAC
AAATGCTGGAGAGGCCCTTAAAAATGCCCCCGTGGGGGATGGAAGCCAGA
GTGTTCTGTTTCCAGTCCCTAAAGACAAATGACCAACCTACAGTCAAACA
TGGATTCAGTCCAACTTTAAAAGTCCCCAGTCTTAGCAGCCTCAATACAA
TTGAAAACCCTCAAATCTTATCTGAGACAGAAGGCAGACTTGTAACTGTG
GCACCTGTAAAATAAGATGTTCCTCAAAAAAGTACACATTTCCGATATCA
AGTTAAGCAGAGTAAATATTTTTCTTCCTAAAGGGAGGTAAGTGGCTATA
GTAAGGAATTTTTGGCAAGGCCAGAAATCAGCAGGGAAACCTCCACCCTG
TTGGCTTTGTAGCCACCATGCAGGGCTGTGGTAGCATCTGAGCCCCGGCA
GACATGGGCAGCTCTGCCGTTTGCAATCCCTTGTAGCCTTTTCCTCAGAC
AAGCTCTGATCAGTGGCTCCAGCTTTGTTGCCAGCTCCTGCTCCTGGCAT
CCCTACTGTAACTGCCCGGCGTTCCCTGCTTGCCAGCTGCCCCTGCTGCT
GATCACCTGAGCTCAGAGGGGCTGTGAGTGACTTTTCTTTAACCATAGCT
CTGTAATTCTTGAGTTCTGTGTGCCTATAAAAAACCAACACCAGTGGATG
GTGCCAGGTTCTGCCAGCTTGGGAAGTCGCCAGTTTCCCCTCTTACCACA
GCTGAGTCTGTGCTGGGTGGCTGTAGTCTGTGCTGGGTGGCTGAACCCTA
CCTACCTGGCTCAGTCTTCAGGCACTCCGATTTTTATGTCCGTCTCCAAA
AAAGGGGGAATTTGCCTTTTTTACTTTGGAATCCTTTGAAGAAATGAAGC
CTTTGCCCTCAAAGCAATCCTTTTCAATTGTCCCCATTTAAAGTTGGGAG
GGGTTTTTTTCTTTAAAGAATTTTAACCCCTCCCCCCCCCCCCCCTTTTT
TTATGTCTTGGTTTTGAGGAAAAAAAGGATTTTTTTAAACCTTTGTCTTG
TTTGGGAATCCCTTTGTTAAACCAATGTGTGGTTTTTAAATTCAAATAAA
ATTGTTCCACCTCTTCGCTTTCTAATGGGGTGGGGAAATAAAGGGCTTGT
GAACCTTCCAACCTCCTTGGGATGTGTGTTGTAAACCCCTCTCATAATTC
TGTTGTATACTCCTCACTTTCTATACAATAGATGTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_e12.b1 MSMg01no323_e12.b1 CHROMAT_FILE:
MSMg01no323_e12.b1 PHD_FILE: MSMg01no323_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:39 2005
         (620 letters)



>mm_chr17_30461944_30462967
          Length = 1024

 Score = 1164 bits (602), Expect = 0.0
 Identities = 617/624 (98%), Gaps = 4/624 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    gctctcttatagaaccaagattaccagcccagagatggcaccacccagaaggggacctct 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 gctctcttatagaaccaagattaccagcccagagatggcaccacccagaaggggacctct 949

                                                                        
Query: 61   ccccttgatcactaattgagaaaatgccttacagctggatctcatggaggcatttcccca 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948  ccccttgatcactaattgagaaaatgccttacagctggatctcatggaggcatttcccca 889

                                                                        
Query: 121  actgaagctcctttctctgtgataactccaaatgtgtcaagttgacacaaaactagccag 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888  actgaagctcctttctctgtgataactccaaatgtgtcaagttgacacaaaactagccag 829

                                                                        
Query: 181  tacaccttccctatgccccagccctgcaggggcaacgcagagtccttgttctctatgcct 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828  tacaccttccctatgccccagccctgcaggggcaacgcagagtccttgttctctatgcct 769

                                                                        
Query: 241  cttcgttgctattctgctgatgcgaagggtatttttgtgaacagaaaatcagatctttct 300
            |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 768  cttcgttgctattctgctgatgcgaagggtacgattgtgaacagaaaatcagatctttct 709

                                                                        
Query: 301  tttatatcactttatttaacttggacccttcggatttttaataacttttaataattaatt 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708  tttatatcactttatttaacttggacccttcggatttttaataacttttaataattaatt 649

                                                                        
Query: 361  ctgactatggaatttaaaaagaattttacttaataaaattactctttataagtgaaaacc 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648  ctgactatggaatttaaaaagaattttacttaataaaattactctttataagtgaaaacc 589

                                                                        
Query: 421  aagaagcagcatcagaaaatgtgaagagccccagtgaaacgtctgc----tttttttttt 476
            ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||
Sbjct: 588  aagaagcagcatcagaaaatgtgaagagccccagtgaaacgtctgctttttttttttttt 529

                                                                        
Query: 477  ttttaccttgataaagatttaacaggcacttagaactgtctcctttgggtcacaaggtaa 536
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528  ttttaccttgataaagatttaacaggcacttagaactgtctcctttgggtcacaaggtaa 469

                                                                        
Query: 537  aaggagggtaaatgtccgaaatctctgccctcattctgtgtgtgtgtcctgctctggggt 596
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468  aaggagggtaaatgtccgaaatctctgccctcattctgtgtgtgtgtcctgctctggggt 409

                                    
Query: 597  cagatcccactgactgtgtttaag 620
            ||||||||||||||||||||||||
Sbjct: 408  cagatcccactgactgtgtttaag 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1024
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1014
Effective search space:   618540
Effective search space used:   618540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)