Query= MSMg01no323_e20.b1 MSMg01no323_e20.b1 CHROMAT_FILE:
MSMg01no323_e20.b1 PHD_FILE: MSMg01no323_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:41 2005
(642 letters)
>mm_chr17_61167480_61168521
Length = 1042
Score = 1152 bits (596), Expect = 0.0
Identities = 628/644 (97%), Gaps = 10/644 (1%)
Strand = Plus / Plus
Query: 1 tatgtaaagtgatgtaacttagaggggcatactgtcaagactgacactgcaatctgagga 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgtaaagtgatgcaacttagaggggcatactgtcaagactgacactgcaatctgagga 260
Query: 61 ccttatgttccctccttcattggctcagtgtctttgaattgcagggatggctttctacct 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttatgttccctccttcattgactcagtgtctttgaattgcagggatggctttctacct 320
Query: 121 tgattgacagattaggttatatgttcatttgtctcactgtgttgtcctttccaagattga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgattgacagattaggttatatgttcatttgtctcactgtgttgtcctttccaagattga 380
Query: 181 ctctgattttagccacatggatatcaaattatgctcagtgataagatgatgaaaggggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 ctctgattttagccacatggatatcaaattatgctcagtgataagatgatgaaagggatg 440
Query: 241 gggttctcccaaaaggttattttttttg-----cttagtctgggttattgggtatgcctg 295
|||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 441 gggttctcccaaaaggttattt-----ggaaggcttagtctgggttattgggtatgcctg 495
Query: 296 ccccaaaccagctcaggaaaaataagtctttgtattcttcagagtgctattctttgagaa 355
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ccccaaaccagctcaggaaaactaagtctttgtattcttcagagtgctattctttgagaa 555
Query: 356 tttatgtgaacagaaactgttcatagttaaaagttgttagaggtggaggaagatttgctg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tttatgtgaacagaaactgttcatagttaaaagttgttagaggtggaggaagatttgctg 615
Query: 416 ttgttatgagatgtggattctgatgtaggggagtaacacagagagttacattgaggttgc 475
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 616 ttgttatgagatgtggattctgatgtagaggagtaacacagagagttgcattgaggttgc 675
Query: 476 attggttgtagaggggtgcacgtagacacagtgtgtgcagacaaagacttaggcttctaa 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 attggttgtagaggggtgcacgtagacacagtgtgtgcagacaaagacttaggcttctaa 735
Query: 536 ggaaagagagaagtatctagaactcaaaccaagtaaaggcccaggtaactaaattattcc 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ggaaagagagaagtatctagaactcaaaccaagtaaaggcccaggtaactaaattattcc 795
Query: 596 ctatgcttgcctgtctcaggacttactatcctaccttttctgag 639
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ctatgcttgcctgtctcaggacttactatcctaccttttctgag 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_e20.g1 MSMg01no323_e20.g1 CHROMAT_FILE:
MSMg01no323_e20.g1 PHD_FILE: MSMg01no323_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:41 2005
(664 letters)
>mm_chr17_61328736_61329799
Length = 1064
Score = 1230 bits (636), Expect = 0.0
Identities = 657/664 (98%)
Strand = Plus / Minus
Query: 1 taggtatgagaaatagacttgaaaaataagtgtatcctgtcatcatcaaatggtagtttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 taggtatgagaaatagacttgaaaaataagtgtatcctgtcatcatcaaatggtagtttt 619
Query: 61 agttgctgaacctggggcttttgtatctcacacattacatgaaacagttctgggggcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 agttgctgaacctggggcttttgtatctcacacattacatgaaacagttctgggggcctt 559
Query: 121 taggtctctttacacgtaataataacttttcttgttaaatggtactggcacaaaacttct 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 558 taggtctctttacacgtaataataacttttcttgttaaatggtactggcccaaaacttct 499
Query: 181 taaagtaatgactcacaatggtcatttataataacagtgtttgtgcttccttctcagtat 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 taaagtaatgactcacaacggtcatttataataacagtgtttgtgcttccttctcagtat 439
Query: 241 cagcgagagaggcatcatggatgttggatatgtctgatttgccatagacttagcctggaa 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 438 cagcgagagaggcatcatggatgttggatatgtctgaaaagccatagacttagcctggaa 379
Query: 301 cagtcaggtagaaaaattaacaacaacttcttaggaagaaatttaaggaagatggcgaat 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 378 cagtcaggtagaaaaattaacatcaacttcttaggaagaaatttaaggaagatggcgaat 319
Query: 361 agccttctatagtagaaggatacttctctttgatagagctgcttttatctattatccttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agccttctatagtagaaggatacttctctttgatagagctgcttttatctattatccttt 259
Query: 421 aatcaacttagcagatctcatcttaggaagccctcattgtccaagcagttaactcaaatg 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 258 aatcaacttagcagatctcatcttaggaagtcctcattgtccaagcagttaactcaaatg 199
Query: 481 ccgcagaaccgcttggtcccttgtctgcatggaatgggtctctgatcacaggtagacaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ccgcagaaccgcttggtcccttgtctgcatggaatgggtctctgatcacaggtagacaag 139
Query: 541 gagtcggtgggaattgacagacagacccgacacaagggagtgtggatctgaatgtaattt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 gagtcggtgggaattgacagacagacccgacacaagggagtgtggatctgaatgtaattt 79
Query: 601 gtcaaattgagcatcaaactttttatacagaagaaaatagggaagccaggtgacacacag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 gtcaaattgagcatcaaactttttatacagaagaaaatagggaagccaggtgacacacag 19
Query: 661 gcaa 664
||||
Sbjct: 18 gcaa 15
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
