Query= MSMg01no323_g08.b1 MSMg01no323_g08.b1 CHROMAT_FILE:
MSMg01no323_g08.b1 PHD_FILE: MSMg01no323_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:53 2005
(644 letters)
>mm_chr17_47287035_47288078
Length = 1044
Score = 1166 bits (603), Expect = 0.0
Identities = 635/647 (98%), Gaps = 3/647 (0%)
Strand = Plus / Plus
Query: 1 taagcacctgtgaacagcatgtatttatctatttgttttttatgtgtatgggtgtttgcc 60
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 taagcacctgtgaacagtgtgtatttatctatttgttttttatgtgtatgggtgtttgcc 257
Query: 61 caggtgtatttctgtgaaccacatacaatcagtgcccccttggagggcagaagagggtgt 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 caggtgtatgtctgtgaaccacatacaatcagtgcccccttggagggcagaagagggtgt 317
Query: 121 tgggtatcctaaaacgggagctacagatgactgtgggaattgaactctggaagagcagcc 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgggtatcctagaacgggagctacagatgactgtgggaattgaactctggaagagcagcc 377
Query: 181 attgtgcttaactgctgggccacctttccagccccaccctggacagaaagttgctttttt 240
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 378 attgtgcttaactgctgggccacctttccagccccacccaggacagaaagttactttttt 437
Query: 241 ---gttgttgttgtttgtttcaagacagggtttctctgtgtagccctggctgtcctggaa 297
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 438 tttgttgttgttgtttgtttcaagacagggtttctctgtgtagccctagctgtcctggaa 497
Query: 298 ctcactctgtagaccaggctggcctccaacttagaaatccacctgcctctgcctcccaag 357
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 498 ctcactctgtagaccaggctggcctccaacttagaaacccatctgcctctgcctcccaag 557
Query: 358 tgctgggattaaaggcgtgcgccactgctgcctggcagaaagttaaatttttgaaactca 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgctgggattaaaggcgtgcgccactgctgcctggcagaaagttaaatttttgaaactca 617
Query: 418 gattggttggttctgtcgttctggagcacacagctttctggtttctttcctttaaacttg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gattggttggttctgtcgttctggagcacacagctttctggtttctttcctttaaacttg 677
Query: 478 acttgtggcagttagttcctgggcggcctcaagtctttgggctctgaccttgagacatag 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 acttgtggcagttagttcctgggcggcctcaagtctttgggctctgaccttgagacatag 737
Query: 538 cagggctccccctgaaacactaatttcccttgtgcagatagcttagtcatatcataccct 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cagggctccccctgaaacactaatttcccttgtgcagatagcttagtcatatcataccct 797
Query: 598 taccattcagcgtaaggtgggcgtgtcaccataacatggtcaaggcc 644
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 taccattcagcgtaaggtgggcgtgtcaccataacatggtcaaggcc 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_g08.g1 MSMg01no323_g08.g1 CHROMAT_FILE:
MSMg01no323_g08.g1 PHD_FILE: MSMg01no323_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:53 2005
(548 letters)
>mm_chr17_47437859_47438803
Length = 945
Score = 822 bits (425), Expect = 0.0
Identities = 507/551 (92%), Gaps = 29/551 (5%)
Strand = Plus / Minus
Query: 1 tgcctcaggagtacagggggcatcttgctttctgagcttactgcagctccctctggtaat 60
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 932 tgcctcaggagtacagggggcatcttgctttctgagcttactgcagttccccctggtaat 873
Query: 61 ccttcctttcatgcctgagatgtcaccccactcccaccccctcgagcctgtctggacttg 120
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 872 ccttcctttcatgcctgagatgtcaccctacccccaccccctcgagcctgtctggacttg 813
Query: 121 gtcaagacagccatcctgtgcatccctgccccattagctccccacccaagtctcttgatg 180
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 812 gtcaagacagccatcctgtgcatccctgccccattagctccctgcccaagtctcttgatg 753
Query: 181 atctctcactgctaggggaccgaccagaggctgaagtgagccgcccattgagaacagtga 240
|||||||| ||||||||||||||||||||||||||||||||
Sbjct: 752 atctctca--------------------ggctgaagtgagccgcccattgagaacagtga 713
Query: 241 tgggtggggagccggtggggggtgggagggggcaatatttgatccctcactggctgtggt 300
|||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||
Sbjct: 712 tgggtggggagccggtggggggtgggagggagcaagacttgatccctcactggctgtggt 653
Query: 301 gcaggctaggtaagccccccccccacttggtgtgggaaatgtggccattctattttt--a 358
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 652 gcaggctaggtaagcccccc------ttggtgtgggaaatgtggccattctattttttta 599
Query: 359 aaccaatactagcttttaagttccaggggaacaaagctgtatcgtaatgcttctgttttg 418
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 598 aaccaatactagcttttaagttccaggggaacaaaactgcatcgtaatgcttctgttttg 539
Query: 419 acatcttttcctctgccccaagcaggtttgtttggctcaaagctgactcagccaatgttt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 acatcttttcctctgccccaagcaggtttgtttggctcaaagctgactcagccaatgttt 479
Query: 479 atggaacacagtgaccaagtttgttcgacacattcctgtgtgtgcggctaaagaccaag- 537
|||||||||||||||||||| ||||| ||| || |||||||||||||||||||||||||
Sbjct: 478 atggaacacagtgaccaagtctgttcaacaaatccctgtgtgtgcggctaaagaccaagg 419
Query: 538 aacaaaagaac 548
|||||||||||
Sbjct: 418 aacaaaagaac 408
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 945
Length adjustment: 10
Effective length of query: 538
Effective length of database: 935
Effective search space: 503030
Effective search space used: 503030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
