BAC Information

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BAC

Clone NameMSMg01-324G02
Chromosome17 (Build37)
Map Location 34,288,487 - 34,288,980
singlet/doubletsinglet
Overlap geneH2-DMb2
Upstream geneLOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa
Downstream geneH2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324G02.T7 (MSMg01no324_g02.b1)MSMg01-324G02.TJ (MSMg01no324_g02.g1)
ACCAG442546AG442547
length743753
length of high quality
(start - end)		612 (71 - 682)488 (76 - 563)
definitionCHROMAT_FILE: MSMg01no324_g02.b1 PHD_FILE: MSMg01no324_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:41 2005CHROMAT_FILE: MSMg01no324_g02.g1 PHD_FILE: MSMg01no324_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGGCATGGATCCGCGGA
ATTCTCAACTTACCAACACATAAACTGCACTAGAAACACTTAAAGAAATG
TTTACATTGTGAGCCATCAGGGAAATGCAAGTCAAAATGACTCTGAGATT
CCATTTTGTTCCTGTCAGAGCAGCTAAGATCAAACACACAAGTGACAGGT
CACGCTGGCAAGGTTGTGGAACAAGAGGAACACTCCTCCATTGTTGGTGG
CAGTTCAAACCTATGCAGCCACTATGGGAATCAATTTAGCAGTTTCCCAT
AAAGTTGGAAATTGATCTATCTTTTTAACCAGCTGTACCACACCTGACAT
ATACCCAAAAGACGATCTGCCACCCCACAAAAAAAAAAACAAAAACAACA
ACAACAACAAAAACTTGCTCAACCATGTTCATAGCAGCTTTATTTGTAAC
GTACCAATGTTGGAGCAAACCTAGATGTCCCTCAATTGAAGAATGAATAC
AGAAAATGTGGTATATTTATACTATGGACTATTATATAGCTGTTACAAAC
AAGGACATCATGAAATTTGCAGGCAAATGGATGGAACTAGAAAAAATTAT
CTCGAGAGAGTCAACACAGACCCAGGAAGACAAACATAGTTTGTGCACAC
TTATAAGGGGATATTAGTCATAAAGTATGGGATAACCGTGTTAAAAATCA
CAGACCCAGATAAGCTAAAAAGAAGGGCTTGGTAGATGGGTGG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGGCTTCCCCCAAGCTTGTGTCTG
GTTGTGGCAGAGCGTGGATGAAGTTGAACCTTCCCTGTGACACAGCCTGT
GGCCCCTACAGGTCTCCCAGCTACATGAAGCAGACCTGGGGCGGGTTTTG
TAAGTATAACTCGAGGGAAGAAATTGAGCTGTAGTGAGATGGAGCTGTCC
TGTGAGGAGGAGGGAGGGGCTCAGCTCACCTCAGAAGAGGCATTTTTAGA
CTGCATTTTATTTTCATATGTGTATGTGTGTGTCTATGTGTGCCTGTCCA
TGTGTCTGTGAGTGTGTGTGAGTGTGCATGCATGTATGTTGGATATGTGA
ATGTGTGTGTGTACATATGCGTGTATGTATGTGTGTGTGTGTTTATGGGC
CCAATTTAAGATTACAATATACCTAGAGGACACTATCAGTTGTGCAGTTC
ACAGTCTGAGAAAACAGGCAATTGCCATTTAAAATCTTAGCACAAAAAGA
AAAGTACACTAAGATCTGGGAGATGGCTCAGTTGGTAAAGTGCTTGCTGC
ACAAATGGCAGTGTCTGAGTTTAGTCCCCGGGACGCACATTACAACGAAA
ACTTACGCCTCTACATAATATCAATCCACCCACATATAACCCCACCTGTC
TTGCGTACAGCCGTTGGTTCCCTTTGCTGCCACAAGCATACGCCATAAGC
CCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_g02.g1 MSMg01no324_g02.g1 CHROMAT_FILE:
MSMg01no324_g02.g1 PHD_FILE: MSMg01no324_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:41 2005
         (488 letters)



>mm_chr17_34288293_34289180
          Length = 888

 Score =  820 bits (424), Expect = 0.0
 Identities = 475/498 (95%), Gaps = 14/498 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggcttcccccaagcttgtgtctggttgtggcagagcgtggatgaagttgaaccttccc 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 195 ctggcttcccccaagcttgtgtctggttgtggcagagcg-ggatgaagttgaaccttccc 253

                                                                       
Query: 61  tgtgacacagcctgtggcccctacaggtctcccagctacatgaagcagacctggggcggg 120
           ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 254 tgtgacatagcctgtggcccctacaggtctcccagctacatgaagcatacctggggcggg 313

                                                                       
Query: 121 ttttgtaagtataactcgagggaagaaattgagctgtagtgagatggagctgtcctgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttttgtaagtataactcgagggaagaaattgagctgtagtgagatggagctgtcctgtga 373

                                                                       
Query: 181 ggaggagggaggggctcagctcacctcagaagaggcatttttagactgcattttattttc 240
           || |||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 374 ggcggagggaggggctcagctcagcttagaagaggcatttttagactgcattttattttc 433

                                                                       
Query: 241 atatgtgtatgtgtgtgtctatgtgtgcctgtccatgtgtctgtg--------agtgtgt 292
           |||||||||||||||||||||||||||| ||||||||||||||||        |||||||
Sbjct: 434 atatgtgtatgtgtgtgtctatgtgtgcatgtccatgtgtctgtgtgtctgtgagtgtgt 493

                                                                       
Query: 293 gtgagtgtgcatgcatgtatgttggatatgtgaatgtgtgt--gtgtacatatgcgtgta 350
           ||||||||||||||||||||| |||||||||||||||||||  ||||||||||| |||||
Sbjct: 494 gtgagtgtgcatgcatgtatggtggatatgtgaatgtgtgtatgtgtacatatgtgtgta 553

                                                                       
Query: 351 tgtatgtgtgtgtgtgtttatgggcccaatttaagattacaatatacctagaggacacta 410
           | |||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 554 t-tatgtgtgtgtgt--ttatgtgcccaatttaagattacaatatacctagaggacacta 610

                                                                       
Query: 411 tcagttgtgcagttcacagtctgagaaaacaggcaattgccatttaaaatcttagcacaa 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tcagttgtgcagttcacagtctgagaaaacaggcaattgccatttaaaatcttagcacaa 670

                             
Query: 471 aaagaaaagtacactaag 488
           ||||||||||||||||||
Sbjct: 671 aaagaaaagtacactaag 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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