Query= MSMg01no325_g09.b1 MSMg01no325_g09.b1 CHROMAT_FILE:
MSMg01no325_g09.b1 PHD_FILE: MSMg01no325_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:54 2005
(249 letters)
>mm_chr17_63286652_63287300
Length = 649
Score = 447 bits (231), Expect = e-130
Identities = 247/257 (96%), Gaps = 8/257 (3%)
Strand = Plus / Plus
Query: 1 caagtgttctgttattatacctagataagagacttgaagtttgtttgtttgt-------- 52
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 caagtgttctgttattatacctagataagagacttgaagtttgtttgtttgtttgtttgt 252
Query: 53 aatgatgctttcccaaaaggaaatgaatattttgccctttgaagtggggaaggaaggctt 112
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aatgatgctttcccaagaggaaatgaatattttgccctttgaagtggggaaggaaggctt 312
Query: 113 tattgggaagccaaagagacactaatgacccaaaaccagatacactgtgagatggtctgg 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tattgggaagccaaagagacactaatgacccaaaaccagatacactgtgagatggtctgg 372
Query: 173 agccccaatgacgtcagtggatggggaagcaccgcgtactcgaattacaatatagagatg 232
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 373 agccccaatgacgtcagtggatggggaagcaccgcgtactcgaattagaatatagagatg 432
Query: 233 actttagaaatggacag 249
|||||||||||||||||
Sbjct: 433 actttagaaatggacag 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no325_g09.g1 MSMg01no325_g09.g1 CHROMAT_FILE:
MSMg01no325_g09.g1 PHD_FILE: MSMg01no325_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:54 2005
(562 letters)
>mm_chr17_63474018_63474979
Length = 962
Score = 1064 bits (550), Expect = 0.0
Identities = 559/562 (99%)
Strand = Plus / Minus
Query: 1 ttaaatttgctctcaagactgttgtgatgggtggtttgctcaacttagaccatcaggtga 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 762 ttaaatttgctctcaagactgttgtgatgggtggtttgttcaacttagaccatcaggtga 703
Query: 61 aattgcttttcagttaaaagaaacatttctcagaattggctcagggcagatcattgcaat 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 702 aattgcttttcagttaaaagaaacatttctcagaattggctcagggcagaacattgcaat 643
Query: 121 tacctggttacatctagaattgctaaactgtgaagtatgaaacctccgcacactgtagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tacctggttacatctagaattgctaaactgtgaagtatgaaacctccgcacactgtagca 583
Query: 181 aatatgatacaaagaaaataaagcagtctcttagccaaaccttattagcttaaaattact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aatatgatacaaagaaaataaagcagtctcttagccaaaccttattagcttaaaattact 523
Query: 241 cctggggatttgtacttacctgaccacacctctgtctttttcaacccagcatattttgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 cctggggatttgtacttacctgaccacacctctgtctttttcaacccagcatattttgaa 463
Query: 301 taatctgaactttaattaatgattattaatttgacatggaactctccacagatgcccaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 taatctgaactttaattaatgattattaatttgacatggaactctccacagatgcccaaa 403
Query: 361 taccatctggagaatgctagaaattacacataataaatgtttctcttatatgactctttg 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 taccatctggagaatgctacaaattacacataataaatgtttctcttatatgactctttg 343
Query: 421 tacccaattagaaatgcacgaggctttctgccatgaagctaagtttttcgggaaatcaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tacccaattagaaatgcacgaggctttctgccatgaagctaagtttttcgggaaatcaaa 283
Query: 481 cttcataaatgcagacagataagatctttcgaacattccctccatgtccctaatgaaggc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 cttcataaatgcagacagataagatctttcgaacattccctccatgtccctaatgaaggc 223
Query: 541 agcaaactggtctcaaatggca 562
||||||||||||||||||||||
Sbjct: 222 agcaaactggtctcaaatggca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
