TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCCTGTAATTCGCATTGGCTTTTTGACGTCCACTTTTGCCTTT
ATGAAATTCCAGAGCACTCACATGTAAAAGTCTTACACCATTGCCTTTAA
GTCTGGCCTCATCAATGCCCTGGACGTGATGTTATTCTCCTTACAGTCTA
TAGCTGATGTGGTGGGTTTAAATACGAGCCACTAGTTGAAGGCTGGTAAA
GATTGTTCTGGTATCTCCATAGCACTACTAACTTGCAGTACCCAGGACCT
TAGAGAGTTCATGCTCCAGAGGAAGCCAGCAAACATACACACCCACACAG
TCAGCTGGAAGGTGAACCAATGAAAGAGTATGGATGGAGAGAATTCAGGT
GGTCCGTCCACTGCAGTCTGCCCCACCTTCTGGGTCAGCACCTCAGCTGC
AGAAGAGGGCAGAGATCTAGTCATATATATGTGTATATATGTGTGTGTGT
ATACATACATGCATACATACATACATATATATGTCATATAGTCACATACA
TATATGACACACACATATAGTCGTAGAAATACATCACAGTGACTGGAATG
CAGAAAGCAGAGACACAATCCGCTCTCCAAATGGGCGTTTGAGATGCTGA
GGTGTAGCAAAGTCCTCTTATACTGAGTTGTGGGCCTGAGCTTTGGAATT
CCCTTTTAGGGGGATGAAAAGGAGGCGAGGAGGCTGGCATC

TGACAGGCGAGGCCCGGNGGCGCCGGGCCTTCCCAACCCGNNAANNANAG
AAGGACTGACNNCAGCGCGGGCCNGAAGNGGAGCCCCACCGCGGGACAGA
ACAGGGCNCCCCCCCGGACGAGNCAGAGCCCCNNCGGCGANGCGACNCCA
CANCCAGGGGCCCNNCAGCACGGAGCAGAAACGGCNCCNNAANNACCAAA
GGNACCCGNCNCGGNGAGGCCGGGGGCCANCNCCCGGACCACTTTTTTAG
CGCAGNTGTAGCTGAGCTGTTTAGGGAGACCTCCAAGATGAAAGTGCCCT
CAAGGGAGCTTTTTTATTAATNAACANGGACACACCNAGAAAGCCNNNAC
AACTGTGTTCTCCCCCCCACCAGCTTTGATACAGGNCCATTAGCGTCTAT
CCTTGGCACACCATCCAATGAGTGCTTCAGGAGACATCTGACAAAAGACA
GTGCAGCTGATCTGGAGAATCATTTCCCACACTTGCTGAGCCTAAGGTTG
AAGAGGGAAACCCATCTGGAGAGCCAGAAGTAGTTTTAGCGCTTAGAATT
GATCCTAATATTCACTCTAAACTAGATTGCACACATTCTCCGTATATTAC
CGTAGGCGGCTAGGGCTCAGCCGACAACGCGCCAGCCTAGCAGGCTTGTT
TTTTTTTTTTATCCAAAAACAGAGCGAGGTGCCTCTCCCACTGGTATCCT
ACCTTTCGACAATATTCTCTGTCCCCG

Query= MSMg01no325_p20.b1 MSMg01no325_p20.b1 CHROMAT_FILE:
MSMg01no325_p20.b1 PHD_FILE: MSMg01no325_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:36 2005
         (673 letters)



>mm_chr17_43368089_43369161
          Length = 1073

 Score = 1123 bits (581), Expect = 0.0
 Identities = 612/623 (98%), Gaps = 2/623 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttcctgtaattcgcattggctttttgacgtccacttttgcctttatgaaattc 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gaattctttcctgtaattagcattggctttttgacgtccacttttgcctttatgaaattc 568

                                                                       
Query: 65  cagagcactcacatgtaaaagtcttacaccattgcctttaagtctggcctcatcaatgcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cagagcactcacatgtaaaagtcttacaccattgcctttaagtctggcctcatcaatgcc 508

                                                                       
Query: 125 ctggacgtgatgttattctccttacagtctatagctgatgtggtgggtttaaatacgagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ctggacgtgatgttattctccttacagtctatagctgatgtggtgggtttaaatacgagc 448

                                                                       
Query: 185 cactagttgaaggctggtaaagattgttctggtatctccatagcactactaacttgcagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cactagttgaaggctggtaaagattgttctggtatctccatagcactactaacttgcagt 388

                                                                       
Query: 245 acccaggaccttagagagttcatgctccagaggaagccagcaaacatacacacccacaca 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 387 acccaggaccttagagagttcatgctccagagggagccagcaaacatacacacccacaca 328

                                                                       
Query: 305 gtcagctggaaggtgaaccaatgaaagagtatggatggagagaattcaggtggtccgtcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtcagctggaaggtgaaccaatgaaagagtatggatggagagaattcaggtggtccgtcc 268

                                                                       
Query: 365 actgcagtctgccccaccttctgggtcagcacctcagctgcagaagagggcagagatcta 424
           ||||| ||||||| ||  ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 267 actgctgtctgcctcagtttccgggtcagcacctcagctgcagaagagggcagagatcta 208

                                                                       
Query: 425 gtcatatatatgtgtatatatgtgtgtgtgt--atacatacatgcatacatacatacata 482
           |||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||
Sbjct: 207 gtcatatatatgtgtatatatgtgtgtgtgtgtatacatatatgcatacatacatacata 148

                                                                       
Query: 483 tatatgtcatatagtcacatacatatatgacacacacatatagtcgtagaaatacatcac 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 tatatgtcatatagtcacatacatatatgacacacacatatagtcgtagaaatacatcac 88

                                                                       
Query: 543 agtgactggaatgcagaaagcagagacacaatccgctctccaaatgggcgtttgagatgc 602
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 87  agtgactggaatgcagaaagcagagacacaatccgctctccaaatgggtgtttgagatgc 28

                                  
Query: 603 tgaggtgtagcaaagtcctctta 625
           |||||||||||||||||||||||
Sbjct: 27  tgaggtgtagcaaagtcctctta 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)