BAC Information

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BAC

Clone NameMSMg01-327K15
Chromosome17 (Build37)
Map Location 3,762,982 - 3,929,149
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383196, LOC100040029, LOC432993, D030013I16Rik, LOC100040128, 1700024P12Rik, LOC435499, LOC224487, Rbm16, LOC665812, LOC621579, LOC624144, Tiam2, LOC630810, Tfb1m, Cldn20, 1700102H20Rik, Nox3
Downstream gene4930470H14Rik, Ppia-ps17_26.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327K15.T7 (MSMg01no327_k15.b1)MSMg01-327K15.TJ (MSMg01no327_k15.g1)
ACCAG444964AG444965
length735737
length of high quality
(start - end)		344 (72 - 415)571 (78 - 648)
definitionCHROMAT_FILE: MSMg01no327_k15.b1 PHD_FILE: MSMg01no327_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:37 2005CHROMAT_FILE: MSMg01no327_k15.g1 PHD_FILE: MSMg01no327_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,762,982 - 3,763,325)(3,928,579 - 3,929,149)
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGCG
GAATTCCTTGCTTCCCAGAAATGGCAAGTTGAGACCCTGTATTCTCTATT
ACTAGGAGTCCTCCTGGGGTTACCCTCATAGATTCCAAAGATTTTTCACT
GTGCTAGGTTTCCACACCCCCCATGCACCCCTGATTCTACCCCCCTCTCT
CTGTGCTCTCTCTCCCTCCATCTCATCCCCCTCCCACTCCTATGCCCACC
TGCCTGCTGTCTACCTGCACATCCTTTTCTTCTTCCAAGGGTGGCCCATG
TATCCCCCCCATCTTCTCTTCTTTATCTAACCACTCTGAGTTTATATATT
GTTGTTTGATTATCATTTACTTAATCCACGAATATCCTAATATCTACTTA
CAAGTGAATTCATACCACAACTGTCTTTATGGGTCTGGGTTACCTCACTC
AGGATTATTTTTTCTAGTTTCATCCATTTGCTTGCAAATTTCATGATGTC
ATTTTAAAAAAACAACTTTGTGTAAATTTATCACATTTTGTTTATCTTCT
CTTTAGTTGAGGAACATCTAAGTTCTTTCCAGTTTCTGGCTATTATGAAC
AAATCTACAATGAACATAGTTGAGTAAGTTTCAGTGTGGTAGAATAGAGT
ATCCTTTAGGTATGTGCCAAGGGGGAACATTTTATATATATATATATAGT
CTTGAGGAAGATTGATTTCCAGTTTTGGGATGAAC

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATGTCTCCTGATCAATGCTTACT
CCATTAATAAGTGAGAGAAATGGTCGTCTGGAGGGTGTAGATTCTGTCCC
CTTTTCTTAATAGCCACCCTGAAATGGTGAACATTTTCTTCTTTCTGTAT
TTAAAAATCAAAGAGGGAAACGTTTGAAACACAACTAAAGTAACCCCCCT
CTCCATGTTCTATGCAGATAACAATACCTTCATAATTAAAGGACTATTAT
TACTATTTAATTATCTGTTTCATTGTTTAATGAATAGGAACTAGTTAATT
ACAGTGATGGGGAAAGACAAAGGACAGTTTTCAAGTGGGGGATGCAAAAC
TCTTCTTTTCAATGTGCCCCCCACACTGCTTTGTGCCTACTTCTGAGCTT
CAGAACCTATATTCACACATCCTTGTCAAATTATGAATCTCTTTCAACAT
GACTTGAAAATATGTTTAAGTGGGACTTTCTTTTTTAATTTTTGCATATT
TAAATGATATCAGATTTATCTCCTGGTACATTGAAAGGGACTGTTTTGGA
TTTATCCATCAAACAATTCTAGGGGTCAAAGGTCAAAGCATCTTTGCCAA
CTACTTGAGCAGCAAGGGCAGCTTTCAAGCAAATGCGGTCCACGACCTAA
GATATATCCTCACAGATCAACATGGACCACTGACCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_k15.b1 MSMg01no327_k15.b1 CHROMAT_FILE:
MSMg01no327_k15.b1 PHD_FILE: MSMg01no327_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:37 2005
         (344 letters)



>mm_chr17_3762783_3763526
          Length = 744

 Score =  650 bits (336), Expect = 0.0
 Identities = 342/344 (99%), Gaps = 1/344 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggcaagttgagaccctgtattctctattactaggagtcctcctggggttaccctcatag 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tggcaagttgagaccctgtatcctctattactaggagtcctcctggggttaccctcatag 259

                                                                       
Query: 61  attccaaagatttttcactgtgctaggtttccacacccccc-atgcacccctgattctac 119
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 260 attccaaagatttttcactgtgctaggtttccacacccccccatgcacccctgattctac 319

                                                                       
Query: 120 ccccctctctctgtgctctctctccctccatctcatccccctcccactcctatgcccacc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccccctctctctgtgctctctctccctccatctcatccccctcccactcctatgcccacc 379

                                                                       
Query: 180 tgcctgctgtctacctgcacatccttttcttcttccaagggtggcccatgtatccccccc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgcctgctgtctacctgcacatccttttcttcttccaagggtggcccatgtatccccccc 439

                                                                       
Query: 240 atcttctcttctttatctaaccactctgagtttatatattgttgtttgattatcatttac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atcttctcttctttatctaaccactctgagtttatatattgttgtttgattatcatttac 499

                                                       
Query: 300 ttaatccacgaatatcctaatatctacttacaagtgaattcata 343
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttaatccacgaatatcctaatatctacttacaagtgaattcata 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no327_k15.g1 MSMg01no327_k15.g1 CHROMAT_FILE:
MSMg01no327_k15.g1 PHD_FILE: MSMg01no327_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:37 2005
         (571 letters)



>mm_chr17_3928379_3929349
          Length = 971

 Score = 1058 bits (547), Expect = 0.0
 Identities = 565/571 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtctcctgatcaatgcttactccattaataagtgagagaaatggtcgtctggagggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 atgtctcctgatcaatgcttactccattaataagtgagagaaatggtcgtctggagggtg 712

                                                                       
Query: 61  tagattctgtccccttttcttaatagccaccctgaaatggtgaacattttcttctttctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tagattctgtccccttttcttaatagccaccctgaaatggtgaacattttcttctttctg 652

                                                                       
Query: 121 tatttaaaaatcaaagagggaaacgtttgaaacacaactaaagtaacccccctctccatg 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tatttaaaaatcagagagggaaacgtttgaaacacaactaaagtaacccccctctccatg 592

                                                                       
Query: 181 ttctatgcagataacaataccttcataattaaaggactattattactatttaattatctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ttctatgcagataacaataccttcataattaaaggactattattactatttaattatctg 532

                                                                       
Query: 241 tttcattgtttaatgaataggaactagttaattacagtgatggggaaagacaaaggacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tttcattgtttaatgaataggaactagttaattacagtgatggggaaagacaaaggacag 472

                                                                       
Query: 301 ttttcaagtgggggatgcaaaactcttcttttcaatgtgccccccacactgctttgtgcc 360
           |||||||||||||||||||||||||||||||||||||||  |  || |||||||||||||
Sbjct: 471 ttttcaagtgggggatgcaaaactcttcttttcaatgtgggctgcaaactgctttgtgcc 412

                                                                       
Query: 361 tacttctgagcttcagaacctatattcacacatccttgtcaaattatgaatctctttcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tacttctgagcttcagaacctatattcacacatccttgtcaaattatgaatctctttcaa 352

                                                                       
Query: 421 catgacttgaaaatatgtttaagtgggactttcttttttaatttttgcatatttaaatga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 catgacttgaaaatatgtttaagtgggactttcttttttaatttttgcatatttaaatga 292

                                                                       
Query: 481 tatcagatttatctcctggtacattgaaagggactgttttggatttatccatcaaacaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tatcagatttatctcctggtacattgaaagggactgttttggatttatccatcaaacaat 232

                                          
Query: 541 tctaggggtcaaaggtcaaagcatctttgcc 571
           |||||||||||||||||||||||||||||||
Sbjct: 231 tctaggggtcaaaggtcaaagcatctttgcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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