CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTACATCCAACAGCAGCAGAGCACACCTTTCTCAGGTCACAATAGCAA
TCTCTAAGATGAAGTATTTTAGAATGCAGAACAAATTCAGAAAGAAAAAA
AACCCATCATACTAAGCATCTTTTATGATCATGATACTAGAAATAATTGT
GGGCAAAGTTACAAATATAAATAATTTAGAATAAGTAATAGAAATTCATA
ACTAGAAAATCTAAAACATGTGGCAATTAAACATATCTTCAAATTCAGTA
GGTTAAAAAAGAAATTATAAGATCTTAAGATTAAAAAGCAAAAAACAAAA
ACCAGCCCAGTATGGAACTCATACCTGTAATCTCCACACATAGAAAGGAG
GCTGAGGCAGGAGGATTATCAGTTCAAGGCCAGCCTGAGCTCTCAATAAA
TAAATAACAAAATCTAAAAAGGAATGAAAGACATGTAATACGCTTTCCAA
AATGTACAGGACCTAGAAGGGAAATTTACAATTGTAAATGCTTATGTTTA
AAAGACTAATCTCATATTAACAACCTACTCTAATACTTTAGAGAACCAGG
GGTAAGGGGAGAAAATCCAAGGTTATCAGAAGTAAGTAATAGCGAACAGC
GATAANAAAAAAAAATAGGGAAATAGTAAATAAAAATCAATAAAATTAAA
AGTTGGTTTTTCAGACAGATTGATGACATAGGAA

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGTGGTTCCTCAGAAAATTGTACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAA
GGACACATGCTCCACTATGTTCATACCACCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAACGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACTAAGAAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCCAAACCTAGGATTCCCAAGATATAAGATACCATTTGCT
AAACACTTGAAACTCAAGAATA

Query= MSMg01no327_k24.b1 MSMg01no327_k24.b1 CHROMAT_FILE:
MSMg01no327_k24.b1 PHD_FILE: MSMg01no327_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:38 2005
         (687 letters)



>mm_chr17_89099262_89100348
          Length = 1087

 Score = 1243 bits (643), Expect = 0.0
 Identities = 655/659 (99%), Gaps = 1/659 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctacatccaacagcagcagagcacacctttctcaggtcacaatagcaatctcta 63
           |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 658 ggaattctccatccaacaacagcagaacacacctttctcaggtcacaatagcaatctcta 599

                                                                       
Query: 64  agatgaagtattttagaatgcagaacaaattcagaaagaaaaaaaacccatcatactaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 agatgaagtattttagaatgcagaacaaattcagaaagaaaaaaaacccatcatactaag 539

                                                                       
Query: 124 catcttttatgatcatgatactagaaataattgtgggcaaagttacaaatataaataatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 catcttttatgatcatgatactagaaataattgtgggcaaagttacaaatataaataatt 479

                                                                       
Query: 184 tagaataagtaatagaaattcataactagaaaatctaaaacatgtggcaattaaacatat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tagaataagtaatagaaattcataactagaaaatctaaaacatgtggcaattaaacatat 419

                                                                       
Query: 244 cttcaaattcagtaggttaaaaaagaaattataagatcttaagattaaaaagcaaaaaac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cttcaaattcagtaggttaaaaaagaaattataagatcttaagattaaaaagcaaaaaac 359

                                                                       
Query: 304 aaaaaccagcccagtatggaactcatacctgtaatctccacacatagaaaggaggctgag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aaaaaccagcccagtatggaactcatacctgtaatctccacacatagaaaggaggctgag 299

                                                                       
Query: 364 gcaggaggattatcagttcaaggccagcctgagctctcaataaataaataacaaaatcta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gcaggaggattatcagttcaaggccagcctgagctctcaataaataaataacaaaatcta 239

                                                                       
Query: 424 aaaaggaatgaaagacatgtaatacgctttccaaaatgtacaggacctagaagggaaatt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 aaaaggaatgaaagacatgtaatacgctttccaaaatgtacaggacctagaagggaaatt 179

                                                                       
Query: 484 tacaattgtaaatgcttatgtttaaaagactaatctcatattaacaacctactctaatac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tacaattgtaaatgcttatgtttaaaagactaatctcatattaacaacctactctaatac 119

                                                                       
Query: 544 tttagagaaccaggggtaaggggagaaaatccaaggttatcagaagtaagtaatagcgaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 tttagagaaccaggggtaaggggagaaaatccaaggttatcagaagtaagtaatagcgaa 59

                                                                      
Query: 604 cagcgataanaaaaaaaaatagggaaatagtaaataaaaatcaataaaattaaaagttg 662
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  cagcgataa-aaaaaaaaatagggaaatagtaaataaaaatcaataaaattaaaagttg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)