BAC Information

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BAC

Clone NameMSMg01-329A18
Chromosome17 (Build37)
Map Location 76,954,591 - 76,954,827
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668787, LOC100043885, LOC100043886
Downstream geneEG624348, LOC545234
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329A18.T7 (MSMg01no329_a18.b1)MSMg01-329A18.TJ (MSMg01no329_a18.g1)
ACCAG445983AG445984
length808754
length of high quality
(start - end)
240 (37 - 276)442 (77 - 518)
definitionCHROMAT_FILE: MSMg01no329_a18.b1 PHD_FILE: MSMg01no329_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:22 2005CHROMAT_FILE: MSMg01no329_a18.g1 PHD_FILE: MSMg01no329_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATA
GTTCCCGTGGTTGATACCTCTGTGGGGCACATTCATAGGGCTATAAAACA
GACATCTGCTTAGGAATTTATACTAAAATGCAAAAGTATCGATTTGGGTT
TGCTGTTTCTACATGAGTCTGAACATAAAGATTCAAGATACCTTTTGCCA
GTCTCAGTCATTGTGATACCTGTGGATTATAAGGAGGTTATGTCTTTAAA
TTGTGTATGGGTATGTGCTTATGAACTTGGTAACGTAGAAGAGATTTGTA
GAGATTTTTTGTTTACCAAAGCGTACGCACAGTCCATTTCTTTGTACTGC
AGAGCAGTCTATCTCATTCTAACACCTTCGGTTCCTTGTCTACTTAATGT
TAACCCCCCCCCCCACCCAATTTATCTCACTTTTTTTTTTTCTCCCTTTT
CCCCCCTTTTCTTTGTTCATCCCCCTTCCTCCTTTTTTTTCTTTTTTCCC
AGCCTCCCATTACTTAATTTCATCCCTTCCACTGTTCACCTCTCCTCTCC
TTTTTTTTTCTCCCCTCCTCCTCCCCTCCTTTTTTTTTACCCTTCGTTTC
TTTTCTCTTTTAACCCCCCCTTTCTTCTTCCCTCTTTCCCCTCTTTTTTT
CTCCTTTTCTTCCTCCCTTTCTCCTCCTTCCTTCCCCCCTCCCCTCCCTT
TTCTTTTTTTTTTCCTCTTCCCCCTCTTTTCTTTTTTCTTTCTTACTTTA
TCCTACCTTTCCTCCTTTCCTATATCTACCTTTTTTCTCTATTCTTACTC
CTTCTTCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATACCCCATCTAGTCTAGAAGATG
TAATGTCAGGGATGCTGGAAGAGAGGAAGTCTCTGTCTTCAGGGAAGGAA
TCACTGACAAGTTATGTTTCTACCAGTGGATATATTCATACCCATGCTCA
CATAGGTAGCCCTAATCAAGCCCAGTAAGTTATCAAGCAAATGCAAAGAC
AAAACAAAATCATGAGAGTAGGATGGAGACTTAGGGTATTGTGAGTTTGG
GAGGCAGAGAGAAAGGAGAGAGGAACTAGAGTGAGCAGTTAAGTTCATAT
ATGAAGTTGTCAACAAACTGAATAAAAACAATTTCCAAGATAAGACCAAC
AGATATAATTTTGAGCAGCGTGTCACTGGAAAATAGAGGGGATAAAAGAC
AACCCACATCCCGCCAGAGATTCGGGGCTCTGGGCAGGTGGATGTGGGGG
ACTGACTCATGCTCTCTACACTGCCCGTGCGAGAATGTGTTTGTGTGAAG
CCTTGGATCTTCAGTCTGTAGGAGTATATAGGTATCGTTTCAGGGTCCCT
GGCACTCCCGTTGTCTCTATTTTACTCCCTCCACCTTTTTATCCCTTGAC
TCTCTTTGTGAACCTTGTTGCCCCTTTTCTTTCCCCTTCCCTCCTAGACT
CCTTTCGTCCCTCCCGTTACCCCCCGCCTTCTTCTTTTTTCCTTCCCGTT
CCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_a18.b1 MSMg01no329_a18.b1 CHROMAT_FILE:
MSMg01no329_a18.b1 PHD_FILE: MSMg01no329_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:22 2005
         (240 letters)



>mm_chr17_76954388_76955027
          Length = 640

 Score =  412 bits (213), Expect = e-119
 Identities = 231/237 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatagttcccgtggttgatacctctgtggggcacattcatagggctataaaac 63
           |||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggaattccatagttctagtggctgatacctctgtggggcacattcatagggctataaaac 381

                                                                       
Query: 64  agacatctgcttaggaatttatactaaaatgcaaaagtatcgatttgggtttgctgtttc 123
           |||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||
Sbjct: 380 agacatctgcttaggaatttatactaaaatacaaaagtatcaatttggttttgctgtttc 321

                                                                       
Query: 124 tacatgagtctgaacataaagattcaagataccttttgccagtctcagtcattgtgatac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tacatgagtctgaacataaagattcaagataccttttgccagtctcagtcattgtgatac 261

                                                                    
Query: 184 ctgtggattataaggaggttatgtctttaaattgtgtatgggtatgtgcttatgaac 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctgtggattataaggaggttatgtctttaaattgtgtatgggtatgtgcttatgaac 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)