BAC Information

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BAC

Clone NameMSMg01-329B18
Chromosome17 (Build37)
Map Location 83,399,154 - 83,562,147
singlet/doubletdoublet
Overlap geneLOC100043900
Upstream geneLOC625467, LOC668836, EG433141, EG625514, LOC100043711
Downstream geneAW548124, EG545226, Eml4, Cox7a2l, Kcng3, Mta3, Haao
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329B18.T7 (MSMg01no329_b18.b1)MSMg01-329B18.TJ (MSMg01no329_b18.g1)
ACCAG446029AG446030
length848778
length of high quality
(start - end)
243 (46 - 288)324 (71 - 394)
definitionCHROMAT_FILE: MSMg01no329_b18.b1 PHD_FILE: MSMg01no329_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:27 2005CHROMAT_FILE: MSMg01no329_b18.g1 PHD_FILE: MSMg01no329_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,561,909 - 83,562,147)(83,399,154 - 83,399,477)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAGTCTGTCTATGGCATAGGTTTTTGACAACAGTCACAAGGGAT
ATATCTGTGAGCAATGTGTAGCCTGACTCCCAGGGACTCACTGTGGAGTA
CTGTGACATTAGACACTGAATGCAGAGAAACCTACTCTTCAACATTTAAA
ATTGTCTTAGCAAAGAGCCATGAGAAAAATGCTAACGAGTAATTGGGTAG
ATTTCCTAAGGGAGCGGTGTTCAGGCTGGGGTCTGCGGCGCTCACTAGAG
ATAGAGGGTGAGGAGGGTCTTTCATCCTTGATGATTCTGACCTATTCATT
ACCTCCCACTGTTTGTTTTTCCCCCTCTTGCCCTCCATCCTCTTATTTCC
ATATAATCAGTTAATTTTCCCCCCCCCCCCCCCCATTTTTTTATACCTAT
TCTCCCCCTCCATCTTCCTTCTTTTACATTTCTCCCCATTTTTTTCCCTT
TTTTTTCTTTCCCCTTTTCCCTTCCATCCCTTCCTTTCCCTTCTTTCCTT
CCCTTTTTCCATTTTTTCTTCCCATACTTCCCTTTTATTTTCATTTATTT
TACCATTCCCATTTTTTTTTTTTTTTCCCCCCCCCTTTTTTTTTTTTTTA
TTTTGTTTACCCTTCTTCCCCACCTTACCATTCCCTTATCCTCACCCCTT
TTTTTTCCATTACCCCCCTTTATCCCCCTTTATTTATTTTTATTTTATAC
ACCCATCCACCCTTTTTTACTTTACTCTATCTATTCCCCCCAATTTACCT
TTCCCCCCTTTATATTTATGACAATTTATCTTTATACATATTGCATTC
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGGAAACACAGTTGTGCGGGGCATGATGG
GAAGAAGTGGAGAGTCCATCGTGAACACAGCAGTAGGAATGTGGGGCAAA
CACAGGGCAATGGACCGGTGACGGCAGAGTAGAGCAGGAGGAAAGTCTGT
GTCCACGTCCTGTGGGGGTGTAATGGCTCGGATAGACAGTGTCCCCCCAG
AGCCTCACACATTAAAGGCTTGGTTCCCGCCACTTGGGAGGTGATTGGAC
CAGGAGATCGCTGGCCTGACCAGTGGATTATTCCACAGATGGAATCATAA
CCCAGTGGCATCATTTGGAAGTAATGGATAATTTGAGGGGTTGGGTTGTT
AAGCCTGTATCTCCCCTCCAGATAGAGCTGTGTTACTTTTCGCTACCCAC
TCTGATTCAAGTTTATTTTTACTACTGTCCATCACGTTATTCTCTGATCT
ACTTCCTTCTCACCCATTTTCATACACCGTTTTCTTGTCCCATTCAGCAG
ATTTTTTATTTCTTTTAATTCTTGTCCCTCCCGATATTTTTTTTTCTTCA
CTTTTCTTTTCCCGCTTTCCTCTCTTTTCCTTTCTTCTTTATCTTTTCTC
CCCTTTTTTCTTTTCTCTTTTCCCCTTTTTACAATCTTATTTTACTTCTT
TTTTCCTCGCTTATCTCCATTTATTACCTACTCCTTCGCTCCCTCTTCTT
TTCCCTTTTACACTCTCTTTTGCTACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_b18.b1 MSMg01no329_b18.b1 CHROMAT_FILE:
MSMg01no329_b18.b1 PHD_FILE: MSMg01no329_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:27 2005
         (243 letters)



>mm_chr17_83561705_83562347
          Length = 643

 Score =  439 bits (227), Expect = e-128
 Identities = 236/239 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcagtctgtctatggcataggtttttgacaacagtcacaagggatatatctgtg 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gaattctcagtctgtatatggcataggtttttgacaacagtcacaagggatatatctgtg 384

                                                                       
Query: 65  agcaatgtgtagcctgactcccagggactcactgtggagtactgtgacattagacactga 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 383 agcaatgtgtagcctgactcccagggactcactgtggagtactgtgacattagacactaa 324

                                                                       
Query: 125 atgcagagaaacctactcttcaacatttaaaattgtcttagcaaagagccatgagaaaaa 184
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atgcagagaaacctattcttcaacatttaaaattgtcttagcaaagagccatgagaaaaa 264

                                                                      
Query: 185 tgctaacgagtaattgggtagatttcctaagggagcggtgttcaggctggggtctgcgg 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgctaacgagtaattgggtagatttcctaagggagcggtgttcaggctggggtctgcgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no329_b18.g1 MSMg01no329_b18.g1 CHROMAT_FILE:
MSMg01no329_b18.g1 PHD_FILE: MSMg01no329_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:27 2005
         (324 letters)



>mm_chr17_83398954_83399677
          Length = 724

 Score =  572 bits (296), Expect = e-168
 Identities = 317/324 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggaaacacagttgtgcggggcatgatgggaagaagtggagagtccatcgtgaacacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggaaacacagttgtgcggggcatgatgggaagaagtggagagtccatcgtgaacacag 260

                                                                       
Query: 61  cagtaggaatgtggggcaaacacagggcaatggaccggtgacggcagagtagagcaggag 120
           |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 261 cagtaggaatgtggggcaaacacagggcgatggaccggtgacggcagagcagagcaggag 320

                                                                       
Query: 121 gaaagtctgtgtccacgtcctgtgggggtgtaatggctcggatagacagtgtccccccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 321 gaaagtctgtgtccacgtcctgtgggggtgtaatggctcggatagacagtgtctcccaag 380

                                                                       
Query: 181 agcctcacacattaaaggcttggttcccgccacttgggaggtgattggaccaggagatcg 240
           ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 agcctcacatattaaaggcttggtttccgccacttgggaggtgattggaccaggagatcg 440

                                                                       
Query: 241 ctggcctgaccagtggattattccacagatggaatcataacccagtggcatcatttggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggcctgaccagtggattattccacagatggaatcataacccagtggcatcatttggaa 500

                                   
Query: 301 gtaatggataatttgaggggttgg 324
           ||||||||||||||| ||||||||
Sbjct: 501 gtaatggataatttggggggttgg 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)